View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_high_22 (Length: 207)
Name: NF14225_high_22
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_high_22 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 47678163 - 47678015
Alignment:
| Q |
59 |
gatacttgttattaccttataaacagttccaaatccaccttgaccaagcttatttgcatcagagaagttgcttgtagctaatctgatggttgcaaagtca |
158 |
Q |
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| T |
47678163 |
gatacttgttgttaccttataaacagttccaaatccaccttgaccaagcttatttgcatcagagaagttgcttgtagctaatctgatggttgcaaagtca |
47678064 |
T |
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| Q |
159 |
aattgcaacaagtcgccaactttaagattattaccagcttcagcttcat |
207 |
Q |
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| T |
47678063 |
aattgcaacaagtcgccaactttaagattattaccagcttcagcttcat |
47678015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 47689601 - 47689465
Alignment:
| Q |
70 |
ttaccttataaacagttccaaatccaccttgaccaagcttatttgcatcagagaagttgcttgtagctaatctgatggttgcaaagtcaaattgcaacaa |
169 |
Q |
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| T |
47689601 |
ttaccttataaacagttccaaaaccaccctcaccaagtttatttgcatcagagaagttgcttgtagctattctgatggtttcaaagtcaaattgcaacaa |
47689502 |
T |
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| Q |
170 |
gtcgccaactttaagattattaccagcttcagcttca |
206 |
Q |
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| T |
47689501 |
atctccaactttaagatcatcaccagtttcagcttca |
47689465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 23189144 - 23189090
Alignment:
| Q |
73 |
ccttataaacagttccaaatccaccttgaccaagcttatttgcatcagagaagtt |
127 |
Q |
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| T |
23189144 |
ccttataaacaggtccaaagccaccttcaccaagcttgtttgcatctgagaagtt |
23189090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 36613012 - 36612950
Alignment:
| Q |
86 |
tccaaatccaccttgaccaagcttatttgcatcagagaagttgcttgtagctaatctgatggt |
148 |
Q |
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| T |
36613012 |
tccaaatccagcttgtccatgcttatttgcattagagaagttgtctgtagttattctgatggt |
36612950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 37069 - 37033
Alignment:
| Q |
73 |
ccttataaacagttccaaatccaccttgaccaagctt |
109 |
Q |
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| T |
37069 |
ccttataaacagttccaaatcccccttcaccaagctt |
37033 |
T |
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