View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_high_5 (Length: 464)
Name: NF14225_high_5
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 3432697 - 3432251
Alignment:
| Q |
18 |
agattaatgagaacttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaag |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
3432697 |
agattaatgagaacttaactaattcaagaaacgatattaagtttccattggttttggatgatatggtgagtacaactgtgaagaggccaaaaaaatcaag |
3432598 |
T |
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| Q |
118 |
gagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgat |
217 |
Q |
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| T |
3432597 |
gagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgat |
3432498 |
T |
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| Q |
218 |
aaagataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432497 |
aaagataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagta |
3432398 |
T |
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| Q |
318 |
gttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgt |
417 |
Q |
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| T |
3432397 |
gttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgt |
3432298 |
T |
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| Q |
418 |
taaaatcagaaacattatgatagagcttgaaggttgaaaatttgaac |
464 |
Q |
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| T |
3432297 |
taaaatcagaaacattatgatagagcttgaaggttgaaaatttgaac |
3432251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 61 - 460
Target Start/End: Complemental strand, 3426484 - 3426082
Alignment:
| Q |
61 |
tccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaaggagcaaaaaggagaaggaagaagaagaagaggttttagttatt |
160 |
Q |
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| T |
3426484 |
tccattggttttggataatgttgttagtacaattgtgaagaggccaaagaaatcaaggagcaagaaggagaaggaagaaaaggaagaggttttagtgatt |
3426385 |
T |
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| Q |
161 |
gaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataaagat---aaggtggttaagccatttaatacagagtttgctg |
257 |
Q |
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| T |
3426384 |
gaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatgaagatgataaggtgattaagccagttaatacggagtttgctg |
3426285 |
T |
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| Q |
258 |
ggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttggg |
357 |
Q |
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| T |
3426284 |
gaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagttgtttaagggttggattaacggatttgttggaagatttggg |
3426185 |
T |
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| Q |
358 |
agttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaa |
457 |
Q |
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|| ||| |||||||| || ||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| || | |||||||||||||| ||||||| |
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| T |
3426184 |
agctgaggatgatgatagcgttgtggttactttggtaccaaggtatgggaaaggaattgtcaaaatcagaaatatcaagatagagcttgaagattgaaaa |
3426085 |
T |
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| Q |
458 |
ttt |
460 |
Q |
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||| |
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| T |
3426084 |
ttt |
3426082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 11897767 - 11898213
Alignment:
| Q |
18 |
agattaatgagaacttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaag |
117 |
Q |
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|||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||||| |
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| T |
11897767 |
agatcaatgagaacttaactaattcaaggaacgatgttaagtttccattggttttggataatattgtgagtacaattgtgaggaggccaaagaaatcaag |
11897866 |
T |
|
| Q |
118 |
gagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgat |
217 |
Q |
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|||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| |
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| T |
11897867 |
gagcaaaacggagaaggaagaagaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgat |
11897966 |
T |
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| Q |
218 |
aaagat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaata |
314 |
Q |
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| T |
11897967 |
gaagatgctaaggagattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaata |
11898066 |
T |
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| Q |
315 |
gtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggact |
414 |
Q |
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| ||| || ||||||||||||| ||| || |||||||||||| ||| |||||||| || |||||||||||||||||||||||||| |||||||||| |
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| T |
11898067 |
gctgtttaagggttggattaacggatttgttgaaagatttgggagctgaggatgatgatagcattgtggttactttggttccaaggtacaggaaaggact |
11898166 |
T |
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| Q |
415 |
tgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttg |
461 |
Q |
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| T |
11898167 |
tgttaaaatcacaaacattaagatagagcttgaaggttgaaaatttg |
11898213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 298 - 434
Target Start/End: Original strand, 11913093 - 11913229
Alignment:
| Q |
298 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttcca |
397 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggttactttggttcca |
11913192 |
T |
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| Q |
398 |
aggtacgggaaaggacttgttaaaatcagaaacatta |
434 |
Q |
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|||| |||||||||||||||||||||| |||||||| |
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| T |
11913193 |
tggtaagggaaaggacttgttaaaatcacaaacatta |
11913229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 11912860 - 11913066
Alignment:
| Q |
18 |
agattaatgagaacttaactaattcaaaaaacgatattaagtttccattggttttggatgatattgtgagtacaactgtgaagaggccnnnnnnntcaag |
117 |
Q |
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| T |
11912860 |
agatcaatgagaacttaactaattcaagaaacgatgttaagtttccattggttttggataatactgtgagtacaaa---------------------aag |
11912938 |
T |
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| Q |
118 |
gagcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgat |
217 |
Q |
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|||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
11912939 |
gagcaaaaaggagaaggaagaagaggaagaggtttcagcgattaaagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaatgat |
11913038 |
T |
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| Q |
218 |
aaagataaggtggttaagccatttaatac |
246 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
11913039 |
gaa-ataaggtggttaagccatttaatac |
11913066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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