View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_high_8 (Length: 378)
Name: NF14225_high_8
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 43030906 - 43030539
Alignment:
| Q |
11 |
cacagacagaattacatcaaaagttttattctcgccctaaatatttcagtactttcacaagctactaatatagggtcttaaattcacaacatgcacacaa |
110 |
Q |
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| T |
43030906 |
cacacacagaattacatcaaaagttttattctcgccctaaatatttcagtactttcacaagctactaatatagggtcttaaattcacaacatgcacacaa |
43030807 |
T |
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| Q |
111 |
taacaaattattcaaacacacttaacagcttctc-------------ttattgacagaactaaaa-gaggtcattcagcatttccagcaagaaactgcaa |
196 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43030806 |
aaacaaattattcaaacacatataacagcttctcacagaactgttatttattgacagaactaaaaagaggtcattcagcatttccagcaagaaactgcaa |
43030707 |
T |
|
| Q |
197 |
caataggctttgatttccatccaagaaccaaacaccctttctcttccacaacagtatatccatcacaaacattattcttcacaagccactgcttagcttg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030706 |
caataggctttgatttccatccaagaaccaaacaccctttctcttccacaacagtatatccatcacaaacattattcttcacaagccactgcttagcttg |
43030607 |
T |
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| Q |
297 |
aaccaccattttaataggtgaaccttgaaatccagccctactcattctcctcctccactgatcaactt |
364 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43030606 |
aaccaccatcttaataggtgaaccttgaaatccagccctactcattctcctcctccactgatcaactt |
43030539 |
T |
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