View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14225_low_1 (Length: 943)

Name: NF14225_low_1
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14225_low_1
NF14225_low_1
[»] chr7 (13 HSPs)
chr7 (16-522)||(22926597-22927080)
chr7 (763-938)||(22926182-22926358)
chr7 (837-924)||(22926094-22926180)
chr7 (784-880)||(14818365-14818461)
chr7 (784-880)||(15265363-15265459)
chr7 (773-880)||(21285341-21285449)
chr7 (769-880)||(38451862-38451974)
chr7 (624-658)||(22926462-22926496)
chr7 (791-880)||(27674813-27674902)
chr7 (764-880)||(41139086-41139203)
chr7 (769-814)||(37928085-37928131)
chr7 (769-858)||(49012419-49012509)
chr7 (764-880)||(29658251-29658368)
[»] chr2 (10 HSPs)
chr2 (769-880)||(29664602-29664714)
chr2 (773-880)||(11133075-11133183)
chr2 (773-855)||(11190087-11190170)
chr2 (773-877)||(3037610-3037715)
chr2 (769-853)||(37123212-37123299)
chr2 (784-879)||(43870953-43871048)
chr2 (769-858)||(9547111-9547201)
chr2 (773-858)||(9796918-9797004)
chr2 (764-880)||(29034975-29035092)
chr2 (774-858)||(36426845-36426930)
[»] chr8 (16 HSPs)
chr8 (769-867)||(35301147-35301246)
chr8 (769-858)||(42762016-42762104)
chr8 (784-880)||(2696532-2696628)
chr8 (773-880)||(7314732-7314840)
chr8 (769-880)||(10292351-10292463)
chr8 (791-880)||(7345428-7345516)
chr8 (784-880)||(1588766-1588862)
chr8 (784-880)||(2800018-2800114)
chr8 (769-880)||(37154513-37154625)
chr8 (830-880)||(21133565-21133615)
chr8 (773-858)||(43468693-43468779)
chr8 (774-858)||(8740645-8740730)
chr8 (764-880)||(13537290-13537407)
chr8 (764-880)||(13626838-13626955)
chr8 (799-880)||(14012611-14012692)
chr8 (835-880)||(38790624-38790669)
[»] chr1 (11 HSPs)
chr1 (781-861)||(30632380-30632461)
chr1 (769-880)||(9527425-9527537)
chr1 (784-880)||(39238715-39238811)
chr1 (784-867)||(17954859-17954942)
chr1 (764-880)||(29491469-29491585)
chr1 (784-880)||(13870081-13870177)
chr1 (769-880)||(25819184-25819296)
chr1 (774-858)||(11405477-11405562)
chr1 (764-880)||(17350060-17350177)
chr1 (791-880)||(33694542-33694630)
chr1 (794-843)||(35840119-35840168)
[»] chr4 (13 HSPs)
chr4 (769-867)||(31480283-31480382)
chr4 (774-880)||(36008274-36008381)
chr4 (794-879)||(9084759-9084844)
chr4 (769-858)||(10098146-10098236)
chr4 (780-880)||(37032174-37032275)
chr4 (784-880)||(8690213-8690309)
chr4 (769-880)||(20610739-20610852)
chr4 (784-880)||(28520731-28520827)
chr4 (781-868)||(41003168-41003255)
chr4 (801-880)||(2565260-2565339)
chr4 (774-867)||(10147275-10147368)
chr4 (764-852)||(21476060-21476149)
chr4 (835-880)||(48512198-48512243)
[»] chr3 (11 HSPs)
chr3 (780-849)||(8493259-8493329)
chr3 (769-880)||(9624982-9625094)
chr3 (773-880)||(14868684-14868792)
chr3 (769-880)||(36331710-36331822)
chr3 (784-880)||(52030120-52030216)
chr3 (784-880)||(27183681-27183777)
chr3 (773-880)||(43774184-43774292)
chr3 (780-858)||(42271008-42271087)
chr3 (769-854)||(31698558-31698644)
chr3 (769-858)||(35483290-35483380)
chr3 (781-858)||(38682254-38682332)
[»] chr5 (10 HSPs)
chr5 (773-880)||(2029116-2029223)
chr5 (772-877)||(3102114-3102220)
chr5 (784-880)||(1463870-1463966)
chr5 (784-880)||(4674815-4674911)
chr5 (764-858)||(23925564-23925659)
chr5 (835-880)||(6447531-6447576)
chr5 (799-880)||(6806655-6806736)
chr5 (830-875)||(9408996-9409041)
chr5 (773-858)||(18872542-18872626)
chr5 (771-880)||(35750261-35750369)
[»] scaffold0002 (1 HSPs)
scaffold0002 (774-880)||(451364-451471)
[»] scaffold0809 (1 HSPs)
scaffold0809 (764-880)||(4785-4901)
[»] chr6 (2 HSPs)
chr6 (821-880)||(2945595-2945654)
chr6 (780-880)||(3448351-3448452)
[»] scaffold0533 (1 HSPs)
scaffold0533 (773-858)||(9347-9433)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Complemental strand, 22927080 - 22926597
Alignment:
Q  16 cccaccaattaaaaatcaaataaggctgccatgttttagtcttaataattcgtttggttgaaattaagtcattggtatccatgggaaaattattttaagt 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  22927080 cccaccaattaaaaatccaataaggctgccatgttttagtcttaataattcgtttggttgaaattaagtcattggtatccatgggaaaattattttttta 22926981  T
Q  116 nnnnnnngtagtgaagaaattgtataaatattcttcaatttctatttgtgcagtatatgttgttttcttgaagatttcttaatattttttggtcaactga 215  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22926980 aaaaaaagtagtgaagaaattgtataaatattcttcaatttctatttgtgcagtatatgttgttttcttgaagatttcttaatattttttggtcaactga 22926881  T
Q  216 ataagacatccatataaatgttagattagcccccnnnnnnntgttagattagcatataattgttggaagttggaatctttctttatctaaggtcttagat 315  Q
    |||| |||||||||||||||||||||||||||||                   | |||| ||||||||||||||||||||||||||||||||||||||||    
T  22926880 ataaaacatccatataaatgttagattagccccc-------------------aaataaatgttggaagttggaatctttctttatctaaggtcttagat 22926800  T
Q  316 tagcatgacaataatcgtctcagctatgtttgtttggaaaacatcagtcagtgagctataagaatatatttgaaataaaaacatcaagttataaaaatcc 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  22926799 tagcatgacaataatcgtctcagctatgcttgtttggaaaacatcagt----gagctataagaatatatttgaaataaaaacatcaagttataacaatcc 22926704  T
Q  416 ttaagtgttatgaaagaaagtgaagagatgatattttattattctcttgtgatcatttttctnnnnnnnnntacaatgatacgagtcaattacatgagtc 515  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| |||    
T  22926703 ataagtgttatgaaagaaagagaagagatgatattttattattctcttgtgatcatttttctaaaaaaaaatacaatgatacgagtcaattacatgggtc 22926604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 763 - 938
Target Start/End: Complemental strand, 22926358 - 22926182
Alignment:
Q  763 ctcaattagtctagtgactagaattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||| |    
T  22926358 ctcaattagtctagtgactagaattcacttttaagatgaataagcagggtgttcggagttcgaacctcgactcctgcatattacaatgcattgtccctac 22926259  T
Q  863 aaactaagttatgctcacctaaacataca-tggttttcaatttatatagataaatggggattaatgacaggtctgtg 938  Q
    ||||| ||||||| | || || ||||||| | ||| ||||||||||||| ||||||||||||| |||||||| ||||    
T  22926258 aaactgagttatgtttacatagacatacattagttgtcaatttatataggtaaatggggattagtgacaggtatgtg 22926182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 837 - 924
Target Start/End: Complemental strand, 22926180 - 22926094
Alignment:
Q  837 tgcatattacaatgcattgtccctgcaaactaagttatgctcacctaaacatacatggttttcaatttatatagataaatggggatta 924  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||| | | |||| ||||||| ||||||| ||||| |||||||||||||    
T  22926180 tgcatattacaatgcattgtctctgcaaacttagtgatgctca-caagacatgcatggttgtcaatttctataggtaaatggggatta 22926094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 14818365 - 14818461
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| ||||||| ||  |||||| | |||| ||||||||| | |||||| ||||||||| |||| || |||||||||    
T  14818365 aattcacttttaaagtgaataagtggggtgtttggggtttgaaccccgacccctgcatataataatgcactgtccctgccaactgagctatgctcac 14818461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 15265363 - 15265459
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| ||||||| ||  |||||| | |||| ||||||||| | |||||| ||||||||| |||| || |||||||||    
T  15265363 aattcacttttaaagtgaataagtggggtgtttggggtttgaaccccgacccctgcatataataatgcactgtccctgccaactgagctatgctcac 15265459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 880
Target Start/End: Original strand, 21285341 - 21285449
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| ||||||||||| || |||| ||||||||| |||||| |||  || ||| | || | ||||||||| |||||||||||||||||| |||| ||     
T  21285341 ctagtggctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagc 21285440  T
Q  872 tatgctcac 880  Q
    |||||||||    
T  21285441 tatgctcac 21285449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 38451974 - 38451862
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| ||||||||||| || |||  ||||||||| |||||| ||| ||| ||| | || | ||||||||| |||||||||||||||||  ||||    
T  38451974 tagtctagtggctagaattcaccttataatgtgaataagtggggtgtccgggattcgaaccccggcccctgcatataacaatgcattgtccctgtcaact 38451875  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  38451874 gagctatgctcac 38451862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 624 - 658
Target Start/End: Complemental strand, 22926496 - 22926462
Alignment:
Q  624 caatgagtatgtagtgaaaacaatttttaaaagag 658  Q
    |||||||||||||||||||||||||||||||||||    
T  22926496 caatgagtatgtagtgaaaacaatttttaaaagag 22926462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 880
Target Start/End: Original strand, 27674813 - 27674902
Alignment:
Q  791 ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||| ||||| ||||||||||  ||| |||||||| | || | ||||||| |||||||||||||| ||| |||| || |||||||||    
T  27674813 ttttaaggtgaatgagtagggtgtctggattttgaatcccaacccttgcatataacaatgcattgtccttgcgaactgagctatgctcac 27674902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 880
Target Start/End: Complemental strand, 41139203 - 41139086
Alignment:
Q  764 tcaattagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| |||||| |||||||||||  |||||||||   |||| ||| ||| ||| | |||| ||||||||| | ||||||||||||||||    
T  41139203 tcaagtagcctagtggctagaaattcacttttaaagtgaataagtgaagtgtccgggattcgaaccccgacccctgcatataataatgcattgtccctgc 41139104  T
Q  863 aaactaagttatgctcac 880  Q
     |||| || |||||||||    
T  41139103 caactgagctatgctcac 41139086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 814
Target Start/End: Complemental strand, 37928131 - 37928085
Alignment:
Q  769 tagtctagtgactagaattcac-ttttaagatgaataagtagggtgt 814  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||    
T  37928131 tagtctagtgactagaattcactttttaaagtgaataagtagggtgt 37928085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 858
Target Start/End: Complemental strand, 49012509 - 49012419
Alignment:
Q  769 tagtctagtgactagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||||||||| || |||||| |||| ||| ||||||||||||||||  |||||||||| |  ||| ||| ||||| | ||||||||||||    
T  49012509 tagtctagtgattataattcatctttaaaggtgaataagtagggtgtctggaatttgaaccctgaccccttcatataataatgcattgtcc 49012419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 880
Target Start/End: Original strand, 29658251 - 29658368
Alignment:
Q  764 tcaattagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| ||||||||||| || |||| ||||||||| |||||| |||  || ||| | || | ||||||||| ||||||||||||| ||||    
T  29658251 tcaagtagcctagtggctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtcgctgc 29658350  T
Q  863 aaactaagttatgctcac 880  Q
     || | || |||||||||    
T  29658351 caattgagctatgctcac 29658368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 29664714 - 29664602
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| ||||||||||| || |||||||||||||| |||||| ||| ||||||| | |||| ||||||||| |||||||||||||||||| || |    
T  29664714 tagtctagtggctagaattcaccttataagatgaataagtggggtgtccgggatttgaaccccgacccctgcatataacaatgcattgtccctgccaatt 29664615  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  29664614 gagctatgctcac 29664602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 880
Target Start/End: Complemental strand, 11133183 - 11133075
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| ||||||||||| || |||| ||||||||| |||||| |||  || ||| | |||| ||||||||| |||||||||||||||| | |||| ||     
T  11133183 ctagtggctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagc 11133084  T
Q  872 tatgctcac 880  Q
    |||||||||    
T  11133083 tatgctcac 11133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 773 - 855
Target Start/End: Original strand, 11190087 - 11190170
Alignment:
Q  773 ctagtgactagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattg 855  Q
    |||||| |||||||||| ||| |||| ||||||||||||||||  |||||||||| | || ||||||||||| | |||||||||    
T  11190087 ctagtggctagaattcatcttataaggtgaataagtagggtgtctggaatttgaaccccggctcctgcatataataatgcattg 11190170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 773 - 877
Target Start/End: Original strand, 3037610 - 3037715
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| ||||||||||| || |||| ||||||||| |||||| |||  || ||| | || | ||||||||| ||||||||||||||| || |||| |||    
T  3037610 ctagtgcctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtcccagccaactgagt 3037709  T
Q  872 tatgct 877  Q
    ||||||    
T  3037710 tatgct 3037715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 769 - 853
Target Start/End: Complemental strand, 37123299 - 37123212
Alignment:
Q  769 tagtctagtgactagaattcac---ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcat 853  Q
    ||||||| |||||||||||||    ||||||  |||||||||||||||| |||| || |||||||||| ||||||||| | |||||||    
T  37123299 tagtctaatgactagaattcatcttttttaaagtgaataagtagggtgtccggagttcgaatctcgacccctgcatataataatgcat 37123212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 879
Target Start/End: Complemental strand, 43871048 - 43870953
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctca 879  Q
    |||||||||||||  ||||||||| |||||| ||| ||| ||| | || ||||||||||| | |||||||||||| ||| |||  || ||||||||    
T  43871048 aattcacttttaaagtgaataagtggggtgtccgggattcgaaccccggctcctgcatataataatgcattgtccttgccaaccgagctatgctca 43870953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 858
Target Start/End: Original strand, 9547111 - 9547201
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||||| || ||||||||||| || |||||||||||||| |||||||||| ||| ||| | || | ||||||||| | ||| ||||||||    
T  9547111 tagtctattggctagaattcaccttataagatgaataagtggggtgttcgggattcgaaccccggcccctgcatataataatacattgtcc 9547201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 858
Target Start/End: Complemental strand, 9797004 - 9796918
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||| ||||||||||| || |||||||||||||| |||||| |||  || ||| | |||| ||||||||| | ||||||||||||    
T  9797004 ctagtgtctagaattcaccttataagatgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtcc 9796918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 880
Target Start/End: Complemental strand, 29035092 - 29034975
Alignment:
Q  764 tcaattagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| |||||| |||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | ||||||||||||||||    
T  29035092 tcaagtagcctagtggctagaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgc 29034993  T
Q  863 aaactaagttatgctcac 880  Q
     || | || |||||||||    
T  29034992 caagtgagctatgctcac 29034975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 858
Target Start/End: Original strand, 36426845 - 36426930
Alignment:
Q  774 tagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||| ||||||||||| || |||||||||||||| ||||||||||| || ||| | | || ||| ||||| | ||||||||||||    
T  36426845 tagtggctagaattcaccttataagatgaataagtggggtgttcggagttcgaaccccaacccctacatataataatgcattgtcc 36426930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 769 - 867
Target Start/End: Original strand, 35301147 - 35301246
Alignment:
Q  769 tagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| |||||| |||||||||||  |||||||||||||||| |||| || ||| | |||| ||||||||| | |||||||||||||||| ||||    
T  35301147 tagtctagtggctagaaattcacttttaaagtgaataagtagggtgtccggagttcgaaccccgacccctgcatataataatgcattgtccctgccaact 35301246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 769 - 858
Target Start/End: Original strand, 42762016 - 42762104
Alignment:
Q  769 tagtctagtgactagaattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||||||| ||||||||||| || ||| ||||||||| |||||| ||| ||||||| |||||| |||||||||   ||||||||||||    
T  42762016 tagtctagtggctagaattcacctt-aaggtgaataagtggggtgtccgggatttgaacctcgacccctgcatatagtaatgcattgtcc 42762104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 2696628 - 2696532
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| |||| ||||||||||||    
T  2696628 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcac 2696532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 880
Target Start/End: Complemental strand, 7314840 - 7314732
Alignment:
Q  773 ctagtgactag-aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    ||||||||||| |||||||||||||  ||||||||| |||||| |||  || ||| |||| | ||||||||| | |||| ||||||||||| || | |||    
T  7314840 ctagtgactaggaattcacttttaaagtgaataagtggggtgtccggggttcgaacctcggcccctgcatataataatgtattgtccctgccaattgagt 7314741  T
Q  872 tatgctcac 880  Q
    |||||||||    
T  7314740 tatgctcac 7314732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 10292463 - 10292351
Alignment:
Q  769 tagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| |||||| |||||||||||  ||||||||| |||||| ||   || |||||||  | ||||||||| | |||||||||||||||| ||||    
T  10292463 tagtctagtggctagaaattcacttttaaagtgaataagtggggtgtccgaggttcgaatctcagcccctgcatataataatgcattgtccctgccaact 10292364  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  10292363 gagctatgctcac 10292351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 880
Target Start/End: Complemental strand, 7345516 - 7345428
Alignment:
Q  791 ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||| ||||||||| ||||||| ||| || ||| | |||| ||||||||| | ||||||| |||||||| |||| ||||||||||||    
T  7345516 ttttaaggtgaataagtggggtgtttggagttggaagcccgacccctgcatataataatgcat-gtccctgccaactgagttatgctcac 7345428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 1588862 - 1588766
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| ||   || ||| | || | ||||||||| | |||||||||||||||| ||||||| |||||||||    
T  1588862 aattcacttttaaagtgaataagtggggtgtccgaggttcgaaccccggcccctgcatataataatgcattgtccctgccaactaagctatgctcac 1588766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 2800114 - 2800018
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  2800114 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 2800018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 37154625 - 37154513
Alignment:
Q  769 tagtctagtgactagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| |||||||||| ||| |||| ||||||| | |||||| | |  || ||||  |||| ||||||||| || |||||||||| |||| ||||    
T  37154625 tagtctagtgcctagaattcaccttataaggtgaataaatggggtgtccagggttcgaattccgacccctgcatataacgatgcattgtctctgccaact 37154526  T
Q  868 aagttatgctcac 880  Q
    ||| |||||||||    
T  37154525 aagctatgctcac 37154513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 830 - 880
Target Start/End: Original strand, 21133565 - 21133615
Alignment:
Q  830 cgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||| | |||||||||| ||||| |||| ||||||||||||    
T  21133565 cgactcctgcatataataatgcattgttcctgccaactgagttatgctcac 21133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 858
Target Start/End: Original strand, 43468693 - 43468779
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||| ||||||||||| || |||| ||||||||| |||||| |||| || ||| | |||| ||| ||||| ||||||||||||||    
T  43468693 ctagtggctagaattcaccttataaggtgaataagtggggtgtccggagttcgaaccccgacccctacatataacaatgcattgtcc 43468779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 858
Target Start/End: Original strand, 8740645 - 8740730
Alignment:
Q  774 tagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||| ||||||||||| || ||||||||||||||||||||| |||| || ||| |||  | ||||||||| | | ||||||||||    
T  8740645 tagtggctagaattcaccttataagatgaataagtagggtgtccggagttcgaacctcagcccctgcatataatactgcattgtcc 8740730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 880
Target Start/End: Original strand, 13537290 - 13537407
Alignment:
Q  764 tcaattagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| |||| ||||| ||| ||||||| || |||||||||||||| ||||||  ||  || ||| | |||| ||||||||| |||||||||||| | ||     
T  13537290 tcaagtagtttagtggctacaattcaccttataagatgaataagtggggtgtctggggttcgaaccccgacacctgcatataacaatgcattgttcatgt 13537389  T
Q  863 aaactaagttatgctcac 880  Q
     |||| ||||||||||||    
T  13537390 caactgagttatgctcac 13537407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 880
Target Start/End: Original strand, 13626838 - 13626955
Alignment:
Q  764 tcaattagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| |||| ||||| ||| ||||||| || |||||||||||||| ||||||  ||  || ||| | |||| ||||||||| |||||||||||| | ||     
T  13626838 tcaagtagtttagtggctacaattcaccttataagatgaataagtggggtgtctggggttcgaaccccgacacctgcatataacaatgcattgttcatgt 13626937  T
Q  863 aaactaagttatgctcac 880  Q
     |||| ||||||||||||    
T  13626938 caactgagttatgctcac 13626955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 799 - 880
Target Start/End: Complemental strand, 14012692 - 14012611
Alignment:
Q  799 tgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||||| |||||| |||| || ||| | || | ||||||||| |||||||||||||||||| |||| |  |||||||||    
T  14012692 tgaataagtggggtgtccggacttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgaactatgctcac 14012611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 880
Target Start/End: Original strand, 38790624 - 38790669
Alignment:
Q  835 cctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||||| | |||||||||||||||| |||| ||||||||||||    
T  38790624 cctgcatataataatgcattgtccctgccaactgagttatgctcac 38790669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 781 - 861
Target Start/End: Original strand, 30632380 - 30632461
Alignment:
Q  781 tagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctg 861  Q
    |||||||||| || ||||||||||||||  ||||||||| ||||||| |||| | ||||||||| |||||||||||||||||    
T  30632380 tagaattcaccttataagatgaataagtgtggtgttcgggatttgaacctcggcccctgcatataacaatgcattgtccctg 30632461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 9527537 - 9527425
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| ||||||||||| || |||||||||||||| |||||| | |  ||  || | |||| ||||||||| |||||||||||||||||| ||||    
T  9527537 tagtctagtggctagaattcaccttataagatgaataagtggggtgtccagggttcaaaccccgacccctgcatataacaatgcattgtccctgccaact 9527438  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  9527437 gagctatgctcac 9527425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 39238811 - 39238715
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| |||| | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  39238811 aattcacttttaaagtgaataagtggggtgtccggggttcgaacctcggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 39238715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 784 - 867
Target Start/End: Original strand, 17954859 - 17954942
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||||||  ||||||||| |||||| ||| ||| ||| | |||  ||||||||| |||||||||||||||||| ||||    
T  17954859 aattcacttttaaagtgaataagtggggtgtccggtattcgaaccacgatccctgcatataacaatgcattgtccctgccaact 17954942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 880
Target Start/End: Complemental strand, 29491585 - 29491469
Alignment:
Q  764 tcaattagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| |||||| |||||||| ||| ||||||||| |||||| |||  || ||| | |||| ||||||||| | ||||||||||||||||    
T  29491585 tcaaatagcctagtggctagaaattcactttaaag-tgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgc 29491487  T
Q  863 aaactaagttatgctcac 880  Q
     |||| || |||||||||    
T  29491486 caactgagctatgctcac 29491469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 13870081 - 13870177
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| ||| |||  || | || | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  13870081 aattcacttttaaagtgaataagtggggtgtccgggattcaaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 13870177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 25819296 - 25819184
Alignment:
Q  769 tagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| |||||| |||||||||||  ||||||||| |||| | |||  || ||| | || ||||| ||||| | |||||||||||||||| ||||    
T  25819296 tagtctagtggctagaaattcacttttaaagtgaataagtggggtatccggggttcgaaccccggctcctacatataataatgcattgtccctgccaact 25819197  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  25819196 gagctatgctcac 25819184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 858
Target Start/End: Complemental strand, 11405562 - 11405477
Alignment:
Q  774 tagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||| ||||||||||| || |||| ||||||||| |||||| |||  || ||| | |||| ||||||||| ||||||||||||||    
T  11405562 tagtggctagaattcaccttataaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtcc 11405477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 880
Target Start/End: Complemental strand, 17350177 - 17350060
Alignment:
Q  764 tcaattagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| |||||| |||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | ||||||||||||||||    
T  17350177 tcaaatagcctagtggctagaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgc 17350078  T
Q  863 aaactaagttatgctcac 880  Q
     |||| || ||| |||||    
T  17350077 caactgagctatactcac 17350060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 880
Target Start/End: Complemental strand, 33694630 - 33694542
Alignment:
Q  791 ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||| ||||||||| ||||||||||  ||  || |||||| ||| ||||| | |||||||  ||||||| |||||||||||||||||    
T  33694630 ttttaaggtgaataagttgggtgttcggcgttcaaacctcgacccctacatataataatgcata-tccctgccaactaagttatgctcac 33694542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 794 - 843
Target Start/End: Original strand, 35840119 - 35840168
Alignment:
Q  794 taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatat 843  Q
    ||||||||||||||   |||||||||||| ||| ||||||||||||||||    
T  35840119 taagatgaataagtgaagtgttcggaattcgaacctcgactcctgcatat 35840168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 769 - 867
Target Start/End: Complemental strand, 31480382 - 31480283
Alignment:
Q  769 tagtctagtgactagaattcac-ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    ||||||||||  |||||||||| ||||||| ||||||||| ||||||||||  || |||| ||  | ||||||||| |||||||||||||||||| ||||    
T  31480382 tagtctagtggttagaattcacgttttaaggtgaataagtggggtgttcggggttcgaatttcagcccctgcatataacaatgcattgtccctgccaact 31480283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 774 - 880
Target Start/End: Complemental strand, 36008381 - 36008274
Alignment:
Q  774 tagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagtt 872  Q
    ||||| ||||||||||| || |||| ||||||||| ||||||||||  || ||| | || | ||||||||| |||||||||||||||||| |||| || |    
T  36008381 tagtggctagaattcaccttataaggtgaataagtggggtgttcggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagct 36008282  T
Q  873 atgctcac 880  Q
    ||||||||    
T  36008281 atgctcac 36008274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 794 - 879
Target Start/End: Complemental strand, 9084844 - 9084759
Alignment:
Q  794 taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctca 879  Q
    |||||||||||||| |||||| ||   || ||||| |||| ||||||||| |||||||||||||||||| |||| || ||||||||    
T  9084844 taagatgaataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcattgtccctgccaactgagctatgctca 9084759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 769 - 858
Target Start/End: Complemental strand, 10098236 - 10098146
Alignment:
Q  769 tagtctagtgactagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||||||| |||||||||| ||| |||||||||||||| |||||| |||  || ||||| || | ||||||||| | ||||||||||||    
T  10098236 tagtctagtggctagaattcatcttataagatgaataagtggggtgtccggggttcgaatcccggcccctgcatataataatgcattgtcc 10098146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 780 - 880
Target Start/End: Original strand, 37032174 - 37032275
Alignment:
Q  780 ctagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctc 878  Q
    ||||||||||| || |||| ||||||||| |||||| |||  || ||||| |||| ||||||||| | |||||||||||| ||| ||||| | |||||||    
T  37032174 ctagaattcaccttataaggtgaataagtggggtgtccggggttcgaatcccgacccctgcatataataatgcattgtccttgccaactatgctatgctc 37032273  T
Q  879 ac 880  Q
    ||    
T  37032274 ac 37032275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 8690309 - 8690213
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | |||| ||||||||| | |||||||||||| ||| |||| || |||||||||    
T  8690309 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccttgccaactgagctatgctcac 8690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 20610852 - 20610739
Alignment:
Q  769 tagtctagtgactagaattcac---ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaa 865  Q
    |||||||||| |||||||||||   ||||||| ||||||||| || ||| |||| || ||| | || | ||||||||| |||||||| ||||||||| ||    
T  20610852 tagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgcatataacaatgca-tgtccctgccaa 20610754  T
Q  866 ctaagttatgctcac 880  Q
    || || |||||||||    
T  20610753 ctgagctatgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 28520731 - 28520827
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  28520731 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 28520827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 781 - 868
Target Start/End: Original strand, 41003168 - 41003255
Alignment:
Q  781 tagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaacta 868  Q
    ||||||||| ||| |||| ||||||||| |||||| |||| || ||| ||| || ||||||||| |||||||||||||||||| |||||    
T  41003168 tagaattcatcttgtaaggtgaataagtggggtgtccggagttcgaa-ctcaacccctgcatataacaatgcattgtccctgccaacta 41003255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 880
Target Start/End: Complemental strand, 2565339 - 2565260
Alignment:
Q  801 aataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||| |||||||||| ||| |||   |||| ||||||||| |||||||||||||||||  |||| || |||||||||    
T  2565339 aataagtggggtgttcgggattcgaactccgacccctgcatataacaatgcattgtccctgtcaactgagctatgctcac 2565260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 774 - 867
Target Start/End: Complemental strand, 10147368 - 10147275
Alignment:
Q  774 tagtgactagaattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    ||||||||| ||||||| |||||| ||||||||| | | ||||||| ||   | | |||| ||| ||||| |||||||||||||||||| ||||    
T  10147368 tagtgactataattcacctttaaggtgaataagtggagcgttcggagttcagaccccgacccctacatataacaatgcattgtccctgccaact 10147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 852
Target Start/End: Original strand, 21476060 - 21476149
Alignment:
Q  764 tcaattagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgca 852  Q
    |||| ||| |||||| |||||||||||||| |||||||||||||| || ||| |||| || |||  ||||| ||||||||| | ||||||    
T  21476060 tcaagtagcctagtggctagaattcactttataagatgaataagtgggatgtccggagttcgaacatcgacccctgcatataataatgca 21476149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 880
Target Start/End: Complemental strand, 48512243 - 48512198
Alignment:
Q  835 cctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||||| |||||||||||||||||| |||| || |||||||||    
T  48512243 cctgcatataacaatgcattgtccctgccaactgagctatgctcac 48512198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 780 - 849
Target Start/End: Complemental strand, 8493329 - 8493259
Alignment:
Q  780 ctagaattcac-ttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaat 849  Q
    ||||||||||| ||||||| |||||||||| |||||||||| || ||||||||||  ||||||||||||||    
T  8493329 ctagaattcaccttttaaggtgaataagtaaggtgttcggagttcgaatctcgacctctgcatattacaat 8493259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 880
Target Start/End: Complemental strand, 9625094 - 9624982
Alignment:
Q  769 tagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| |||||| |||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| ||||    
T  9625094 tagtctagtggctagaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaact 9624995  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  9624994 gagctatgctcac 9624982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 880
Target Start/End: Complemental strand, 14868792 - 14868684
Alignment:
Q  773 ctagtgactagaatt-cacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| |||||||| |||||||||  ||||||||| ||||||||||  || ||| | || | ||||||||| | |||||||||||||||| |||| ||     
T  14868792 ctagtggctagaatttcacttttaaagtgaataagtggggtgttcggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagc 14868693  T
Q  872 tatgctcac 880  Q
    |||||||||    
T  14868692 tatgctcac 14868684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 769 - 880
Target Start/End: Original strand, 36331710 - 36331822
Alignment:
Q  769 tagtctagtgactagaattcacttttaaga-tgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaact 867  Q
    |||||||||| ||||||||||||||| | | ||||||||| |||||| |||  || ||| | |||| ||||||||| | |||||||||||||||| || |    
T  36331710 tagtctagtggctagaattcactttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgccaatt 36331809  T
Q  868 aagttatgctcac 880  Q
     || |||||||||    
T  36331810 gagctatgctcac 36331822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 52030216 - 52030120
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  |||||||||||||||| |||  || ||| | || | ||||||||| | ||| |||||||||||| |||| ||||||||||||    
T  52030216 aattcacttttaaagtgaataagtagggtgtccggggttcgaaccccggcccctgcatataataatacattgtccctgccaactgagttatgctcac 52030120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 27183681 - 27183777
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  27183681 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 27183777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 773 - 880
Target Start/End: Complemental strand, 43774292 - 43774184
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| ||||||||||| || |||| ||||||||| ||||||  ||  || ||| | |||| ||||||||| |||||||||||||||||| |||| ||     
T  43774292 ctagtggctagaattcaccttataaggtgaataagtggggtgtctggggttcgaaccccgacccctgcatataacaatgcattgtccctgccaactgagc 43774193  T
Q  872 tatgctcac 880  Q
    ||| |||||    
T  43774192 tatactcac 43774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 858
Target Start/End: Original strand, 42271008 - 42271087
Alignment:
Q  780 ctagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    ||||||||||| || |||| |||||||||||||||| |||| || ||| | || | ||||||||| ||||||||||||||    
T  42271008 ctagaattcaccttataaggtgaataagtagggtgtccggagttcgaaccccggcccctgcatataacaatgcattgtcc 42271087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 854
Target Start/End: Complemental strand, 31698644 - 31698558
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcatt 854  Q
    |||||||||| ||||||||||| || |||||||||||||| |||||||||   || ||| | || ||||||||||| | ||||||||    
T  31698644 tagtctagtggctagaattcaccttataagatgaataagtggggtgttcgaggttcgaaccccggctcctgcatataataatgcatt 31698558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 769 - 858
Target Start/End: Complemental strand, 35483380 - 35483290
Alignment:
Q  769 tagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||||||| |||||||| || || |||| ||||||||| |||||| ||| ||| ||| | |||| ||||||||| | ||||||||||||    
T  35483380 tagtctagtggctagaatttaccttataaggtgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcattgtcc 35483290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 781 - 858
Target Start/End: Original strand, 38682254 - 38682332
Alignment:
Q  781 tagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||||||| || ||||||||||||| ||||||| ||| ||| ||||| |||| ||||||||| | |||| |||||||    
T  38682254 tagaattcaccttataagatgaataaggagggtgtccgggattcgaatcccgacccctgcatataataatgtattgtcc 38682332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 773 - 880
Target Start/End: Original strand, 2029116 - 2029223
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagt 871  Q
    |||||| ||||||||||| || |||| ||||||||| ||||||||||  || ||||| |||| ||||||||| | ||| |||||||| | | ||||||||    
T  2029116 ctagtggctagaattcaccttataaggtgaataagtggggtgttcggggttcgaatcccgacccctgcatataataatacattgtcc-taccaactaagt 2029214  T
Q  872 tatgctcac 880  Q
    |||||||||    
T  2029215 tatgctcac 2029223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 772 - 877
Target Start/End: Original strand, 3102114 - 3102220
Alignment:
Q  772 tctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaag 870  Q
    ||||||| |||||||||||||| |||  | ||||| | ||||||||||  || ||| | |||||||| ||||| |||||||||||||||||| |||| ||    
T  3102114 tctagtggctagaattcactttataaagtaaataaatggggtgttcggggttcgaaccccgactcctacatataacaatgcattgtccctgccaactgag 3102213  T
Q  871 ttatgct 877  Q
     ||||||    
T  3102214 ctatgct 3102220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Complemental strand, 1463966 - 1463870
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | || | ||||||||| | |||||||||||||||| |||| || |||||||||    
T  1463966 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcac 1463870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 880
Target Start/End: Original strand, 4674815 - 4674911
Alignment:
Q  784 aattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||||||||||  ||||||||| |||||| |||  || ||| | |||| ||||||||| | |||||||||||||||  |||| || |||||||||    
T  4674815 aattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcattgtccctgtcaactgagctatgctcac 4674911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 764 - 858
Target Start/End: Complemental strand, 23925659 - 23925564
Alignment:
Q  764 tcaattagtctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||| |||||||||| ||||||||||| || |||||||||||||| |||| | ||| ||| ||| |  ||| ||||||||| | ||||||||||||    
T  23925659 tcaagtagtctagtggctagaattcaccttataagatgaataagtggggtatccgggattcgaacccagacccctgcatataataatgcattgtcc 23925564  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 880
Target Start/End: Original strand, 6447531 - 6447576
Alignment:
Q  835 cctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||||| | |||||||||||||||| |||| ||||||||||||    
T  6447531 cctgcatataataatgcattgtccctgccaactgagttatgctcac 6447576  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 799 - 880
Target Start/End: Original strand, 6806655 - 6806736
Alignment:
Q  799 tgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    ||||||||| | |||| |||  || ||||| |||| ||||||||| ||||||||||||| |||| |||| || |||||||||    
T  6806655 tgaataagtggagtgtccggggttcgaatcccgacccctgcatataacaatgcattgtctctgccaactgagctatgctcac 6806736  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 830 - 875
Target Start/End: Original strand, 9408996 - 9409041
Alignment:
Q  830 cgactcctgcatattacaatgcattgtccctgcaaactaagttatg 875  Q
    |||| ||||||||| |||||||||||||||||| |||| |||||||    
T  9408996 cgacccctgcatataacaatgcattgtccctgccaactgagttatg 9409041  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 773 - 858
Target Start/End: Complemental strand, 18872626 - 18872542
Alignment:
Q  773 ctagtgactagaattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||| ||||||||||| || ||| ||||||||| ||||||||||  || ||| | |||| ||||||||| | ||||||||||||    
T  18872626 ctagtggctagaattcacctt-aaggtgaataagtggggtgttcggggttcgaaccccgacccctgcatataataatgcattgtcc 18872542  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 771 - 880
Target Start/End: Complemental strand, 35750369 - 35750261
Alignment:
Q  771 gtctagtgactagaattcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaag 870  Q
    |||||||| ||||||||||| |||||   ||||||||  ||| |||| |  |||||  ||||||| |||| ||||||||||||||||| | | |||| ||    
T  35750369 gtctagtggctagaattcacctttaaagcgaataagtgcggttttcgaagattgaacatcgactc-tgcaaattacaatgcattgtccttaccaactgag 35750271  T
Q  871 ttatgctcac 880  Q
    ||||||||||    
T  35750270 ttatgctcac 35750261  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 774 - 880
Target Start/End: Original strand, 451364 - 451471
Alignment:
Q  774 tagtgactagaattca-cttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagtt 872  Q
    ||||| |||||||||| ||| |||||||||||||| |||||| |||| || ||| | || | ||| ||||| |||||||||||||| ||| |||| || |    
T  451364 tagtggctagaattcatcttataagatgaataagtggggtgtccggagttcgaaccccggcccctacatataacaatgcattgtccttgctaactgagct 451463  T
Q  873 atgctcac 880  Q
    ||||||||    
T  451464 atgctcac 451471  T

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Target: scaffold0809 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 880
Target Start/End: Original strand, 4785 - 4901
Alignment:
Q  764 tcaattagtctagtgactagaa-ttcacttttaagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgc 862  Q
    |||| ||| |||||| |||||| |||||||||||  ||||||||| |||||| ||| ||| ||| | || | ||||||||| | ||||||||||||||||    
T  4785 tcaagtagcctagtggctagaaattcacttttaaagtgaataagtggggtgtccgggattcgaaccccgcc-cctgcatataataatgcattgtccctgc 4883  T
Q  863 aaactaagttatgctcac 880  Q
     |||| || |||||||||    
T  4884 caactgagctatgctcac 4901  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 880
Target Start/End: Complemental strand, 2945654 - 2945595
Alignment:
Q  821 tttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctcac 880  Q
    |||||| | |||| ||||||||| |||||||||||||||||| |||| || |||||||||    
T  2945654 tttgaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatgctcac 2945595  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 880
Target Start/End: Complemental strand, 3448452 - 3448351
Alignment:
Q  780 ctagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtccctgcaaactaagttatgctc 878  Q
    ||||||||||| || |||||||||||||| |||||| |||  || ||| | || | ||||| ||| |||||||||||||||||| || | || |||||||    
T  3448452 ctagaattcaccttataagatgaataagtggggtgtccggggttcgaaccccggcccctgcgtataacaatgcattgtccctgccaattgagctatgctc 3448353  T
Q  879 ac 880  Q
    ||    
T  3448352 ac 3448351  T

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Target: scaffold0533 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 773 - 858
Target Start/End: Complemental strand, 9433 - 9347
Alignment:
Q  773 ctagtgactagaattcacttt-taagatgaataagtagggtgttcggaatttgaatctcgactcctgcatattacaatgcattgtcc 858  Q
    |||||| ||||||||||| || |||| ||||||||| | |||||||||||| ||| | |||| ||||||| | | ||||||||||||    
T  9433 ctagtggctagaattcaccttataaggtgaataagtggagtgttcggaattcgaaccccgacccctgcatgtaataatgcattgtcc 9347  T

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