View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_low_11 (Length: 371)
Name: NF14225_low_11
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 7340511 - 7340822
Alignment:
| Q |
1 |
gatgaatattttgttaattatcataaagttatctaatcttagaacattggcctatgagttacaagagttgacatctatgatcagcaagtaagattaatag |
100 |
Q |
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| T |
7340511 |
gatgaatattttgttaattatcataaagttatctaatcttaggacattggcctatgagttacaagagttgacatctatgaccaacaagtaagattaatag |
7340610 |
T |
|
| Q |
101 |
tttgatgcacaaatccattacattgcagttaaaaccaaaaggaaatgcagatcagccattgaaagcaaggagaaaaggccatcacaattcacaaaagtcc |
200 |
Q |
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| T |
7340611 |
tttgatgcacaaatccattacattgcagttaaaaccaaaaggaaatgcagatcagccattgaaagcaaggagaaaaggccatcacaattcacaaaagtcc |
7340710 |
T |
|
| Q |
201 |
tgca-tttgacaactcgtatagtcgcagcgcagctcaattggaataatatgcaattcggattttaatttgatggaagaaggaattgaaattttactattt |
299 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7340711 |
tgcattttgacaactcgtatagtcgcagcgcagctcagtcggaataatatgcaattcggattttaatttgatggaagaaggaattgaaatttgactattt |
7340810 |
T |
|
| Q |
300 |
cagaatgagttt |
311 |
Q |
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|||||||||||| |
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| T |
7340811 |
cagaatgagttt |
7340822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 44413380 - 44413202
Alignment:
| Q |
134 |
accaaaaggaaatgcagatcagccattgaaagcaa-ggagaaaaggccatcacaattcacaaaagtcctgcatttgacaactcgtatagtcgcagcgcag |
232 |
Q |
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| T |
44413380 |
accaaaaggaaatgcggctcagccattggaaacgatggagaaaaggccatcatgattaacaaatgtcctgcttttgacaactgatgtagtagcaatgcag |
44413281 |
T |
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| Q |
233 |
ctcaattggaataatatgcaattcggattttaatttgatggaagaaggaattgaaattttactatttcagaatgagttt |
311 |
Q |
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| T |
44413280 |
ttcaatcgaaaaaacttgcggttcggattttaatttgatggaacaaggaatttaaatttgacaatttcaggaagagttt |
44413202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 7340844 - 7340885
Alignment:
| Q |
312 |
taatttgatccctaaacccttccaatcaacaatacatagcct |
353 |
Q |
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| T |
7340844 |
taatttgatccctaaacccttccaatcaacaatacatagcct |
7340885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 43683488 - 43683448
Alignment:
| Q |
261 |
tttaatttgatggaagaaggaattgaaattttactatttca |
301 |
Q |
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| T |
43683488 |
tttaatttgatggaagaagatattgaaatttgactatttca |
43683448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 23083837 - 23083969
Alignment:
| Q |
1 |
gatgaatattttgttaattatcataaagttatctaatcttagaacattggcctatgagttacaagagttgacatctatgatcagcaagtaagattaatag |
100 |
Q |
| |
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|||||||||||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||| ||| | |
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| T |
23083837 |
gatgaatattttgtcaattatcagcaagttatttaatcttgaaacattggcctatgagttacaagagttgacatatatgaccaaaaagtaagatcaattg |
23083936 |
T |
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| Q |
101 |
tttgatgcacaaatccattacattgcagttaaa |
133 |
Q |
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| T |
23083937 |
tctgatgcacaaatccagtaccttgtagttaaa |
23083969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 23083968 - 23084042
Alignment:
| Q |
236 |
aattggaataatatgcaattcggattttaatttgatggaagaaggaattgaaattttactatttcagaatgagttt |
311 |
Q |
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||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
23083968 |
aattgaaattatatgcaattcagattt-aatttgatggaagaaggaattgaaatttgactatttcaaaaagagttt |
23084042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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