View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_low_4 (Length: 520)
Name: NF14225_low_4
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 227 - 505
Target Start/End: Complemental strand, 8677350 - 8677071
Alignment:
| Q |
227 |
ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgtt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| |
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| T |
8677350 |
ttattttatctcattttcggatgcaaatgatgtcttttttgtaaactttaattaagacgttcagtagttatcatctatggttgcattggattgacttgtt |
8677251 |
T |
|
| Q |
327 |
atcttgttggcatggtttggaaaaagacaatgattattgcttaactatttcattcttcttggtccttaactgctcattgaaaaaggttttggtaagggtg |
426 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8677250 |
atcttgttggcattgtttggaaaaagacaatgattattgctcaactatttcattcttcttggtccttaactgctcattgaaaaaggttttgataagggtg |
8677151 |
T |
|
| Q |
427 |
acatataaatgagccatcaatctgaggagattcgatcaaattca-ttttgatttaaaacttttaacaattgaatttcaat |
505 |
Q |
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| T |
8677150 |
acatataaatgagccatcaatctgaggagcttcgatcaaattcatttttgatttaaaacttttaacaattgaatttcaat |
8677071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 8677588 - 8677383
Alignment:
| Q |
18 |
gtgtgcaaatgttgaattgcgggaagaaaatgaagttctttcctcgtcacagcaaatttgattgagatttggaattacacgttcttcatcatcttatggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8677588 |
gtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaacaaatttgattgagatttggaattacacattcttcatcatcttatggt |
8677489 |
T |
|
| Q |
118 |
gacttgatggtgaagaatttggtgatgagcccgtatatgaagaaaagtacgtctattttcactttgatgggaatattctgatccgtccttactacaattt |
217 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8677488 |
gacttgatggtgaagaatttggtgacgagcccatatatgaagaaaagtacgtctcttttcactttgatgggaatattctgatccgtccttactacaattt |
8677389 |
T |
|
| Q |
218 |
taggaa |
223 |
Q |
| |
|
|||||| |
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|
| T |
8677388 |
taggaa |
8677383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 8643377 - 8643229
Alignment:
| Q |
233 |
tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgttatcttg |
332 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | || ||||||||||||||||| |
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| T |
8643377 |
tatctcattttaggatgcaaatgatgtcttttttgtaaactttaattcagatgttcagtaattatcatctatggttttactatattgacttgttatcttg |
8643278 |
T |
|
| Q |
333 |
ttggc-atggtttggaaaaagacaatgattattgcttaactatttcatt |
380 |
Q |
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|
||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
8643277 |
ttggcaatggtttagaaaaagacaatgattattgctaaactatttcatt |
8643229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 8635951 - 8635801
Alignment:
| Q |
233 |
tatctcattttcggatgcaaatgatgtctttttt-gtaaactttaattcagatgttcagtagttatcatctgtggttgcattagattgacttgttatctt |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
8635951 |
tatctcattttaggatgcaaatgatgtctttttttgtaaactttaattaagatgttcagtagttatcatctatggttttactagattgacttgttatctt |
8635852 |
T |
|
| Q |
332 |
gttggc-atggtttggaaaaagacaatgattattgcttaactatttcattc |
381 |
Q |
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|
|||||| ||||||| |||||||||||||||| ||||| ||||||||||||| |
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|
| T |
8635851 |
gttggcaatggtttagaaaaagacaatgattgttgctcaactatttcattc |
8635801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 383 - 502
Target Start/End: Complemental strand, 8643172 - 8643056
Alignment:
| Q |
383 |
tcttggtccttaactgctcattgaaaaaggttttggtaagggtgacatataaatgagccatcaatctgaggagattcgatcaaattcattttgatttaaa |
482 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| ||||||| ||||||| ||| |||||||||||||| |
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| T |
8643172 |
tcttggttcttaactgctcattgaaaa-ggtttttgtaagggtggaatataa-tgagccatcaatttgaggagcttcgatcgaat-cattttgatttaaa |
8643076 |
T |
|
| Q |
483 |
acttttaacaattgaatttc |
502 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
8643075 |
acttttaccaattgaatttc |
8643056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 8643825 - 8643719
Alignment:
| Q |
18 |
gtgtgcaaatgttgaattgcgggaagaaaatgaagttctttcctcgtcacagcaaatttgattgagatttggaattacacgttcttcatcatcttatggt |
117 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
8643825 |
gtgtgcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttct-ttgagatttggaattacacgttcttcatcatcttatggt |
8643727 |
T |
|
| Q |
118 |
gacttgat |
125 |
Q |
| |
|
|||||||| |
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|
| T |
8643726 |
gacttgat |
8643719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 8643699 - 8643600
Alignment:
| Q |
122 |
tgatggtgaagaatttggtgatgagcccgtatatgaagaaaagtacgtctattttcactttgatgggaatattctgatccgtccttactacaattttagg |
221 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| | ||||||||||||| ||||||| |||||| | ||||||||| || | | ||||||||||||||| |
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|
| T |
8643699 |
tgatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtctcttttcacattgatgaggatattctgacccttgcatactacaattttagg |
8643600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 8636364 - 8636291
Alignment:
| Q |
18 |
gtgtgcaaatgttgaattgcgggaagaaaatgaagttctttcctcgtcacagcaaatttgattgagatttggaat |
92 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||| || |||| || |||||||||||||| |
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|
| T |
8636364 |
gtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaa-ctgtttgagatttggaat |
8636291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 8545365 - 8545409
Alignment:
| Q |
234 |
atctcattttcggatgcaaatgatgtcttttttgtaaactttaat |
278 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8545365 |
atctcattttaggatgcaaatgatgtcttttttgtaaactttaat |
8545409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 8636283 - 8636183
Alignment:
| Q |
121 |
ttgatggtgaagaatttggtgatgagcccgtatatgaagaaaagtacgtctattttcactttgatgggaatattctgatccgtccttactacaattttag |
220 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||| | |||| |||| ||||| ||||||| |||||||| ||| | | | || | |||| ||||||||||| |
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|
| T |
8636283 |
ttgatggtgaagaattcggcgatgagcccatatcttaagagaagtgcgtctcttttcacattgatggggatactgtaacccttgcttaatacaattttag |
8636184 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
|
| |
|
|
| T |
8636183 |
g |
8636183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 8640281 - 8640227
Alignment:
| Q |
233 |
tatctcattttcggatgcaaatgatgtcttttttgtaaactttaattcagatgttc |
288 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| |
|
|
| T |
8640281 |
tatctcattttaggatgcaaacaatgtcttttt-gtaagctttaattcagatgttc |
8640227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 1601349 - 1601392
Alignment:
| Q |
245 |
ggatgcaaatgatgtcttttttgtaaactttaattcagatgttca |
289 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
1601349 |
ggatgcaaatgatgtc-tttttgtaaactttaatctagatgttca |
1601392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 8527719 - 8527663
Alignment:
| Q |
234 |
atctcattttcggatgcaaatgatgtctt-ttttgtaaactttaattcagatgttca |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
8527719 |
atctcattttaagatgcaaatgatgtctttttttgtaaaatttaatctagatgttca |
8527663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 9075532 - 9075576
Alignment:
| Q |
234 |
atctcattttcggatgcaaatgatgtcttttttgtaaactttaat |
278 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||| ||||||||| |
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|
| T |
9075532 |
atctcgttttaggatgcaaatgatggcttttttgttaactttaat |
9075576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 44438360 - 44438454
Alignment:
| Q |
128 |
tgaagaatttggtgatgagcccgtatatgaagaaaagtacgtc---tattttcactttgatgggaatattctgatccgtccttactacaattttagg |
221 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||| ||||||| | ||||| || |||| ||| || | ||||||||||||||||| |
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|
| T |
44438360 |
tgaagaatttggcgatgagcccatttatgaagaaaagtacgtcgtctattttcgcattgatcgg--tattttgacccttgcttactacaattttagg |
44438454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 44438680 - 44438721
Alignment:
| Q |
234 |
atctcattttcggatgcaaatgatgtcttttttgtaaacttt |
275 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||||||| |
|
|
| T |
44438680 |
atctcattttaggaggcaaatgatgtcttttttctaaacttt |
44438721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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