View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_low_6 (Length: 499)
Name: NF14225_low_6
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 89 - 436
Target Start/End: Complemental strand, 40287136 - 40286789
Alignment:
| Q |
89 |
gggtattagaagtgtctcaatgaaatgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatacctattaaagatgacttta |
188 |
Q |
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| T |
40287136 |
gggtattagaagtgtctccatgaaatgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatagctattaaagatgacttta |
40287037 |
T |
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| Q |
189 |
taaaattgttacatttatttgttcgtaaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcat |
288 |
Q |
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| T |
40287036 |
taaaattgttacatttatttgttcataaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcat |
40286937 |
T |
|
| Q |
289 |
gatgatgatgattggatagatagttaccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286936 |
gatgatgatgattggatagatagttaccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatg |
40286837 |
T |
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| Q |
389 |
gctttactttccaactaagcaccagctagataacacacttatctacct |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286836 |
gctttactttccaactaagcaccagctagataacacacttatctacct |
40286789 |
T |
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