View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14225_low_8 (Length: 427)
Name: NF14225_low_8
Description: NF14225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14225_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 47254672 - 47254463
Alignment:
| Q |
19 |
atcttcccaatttaccaaatctcaatgtttctccaaaaccccaaactcagaagaatcttaggccaaagaaatctgatgctgtccgtttggtttatggttt |
118 |
Q |
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| T |
47254672 |
atcttcccaatttaccaaatctcaatgtttctcccaaaccccaaactcagaagaaacttaggccaaagaaatctgatgctgtccgtttggtttatggttt |
47254573 |
T |
|
| Q |
119 |
caattttgataaaccagatttcagcaaaatcaatgcaaaatctgattatgaagagatttttgagccttatgcatctgatatctccaactatcttcgcaca |
218 |
Q |
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| T |
47254572 |
caattttgataaaccagatttcagcaaaatcaatgcaaaatctgattatgaagagatttttgagtcttatgcatctgatatctccaactatcttcgcaca |
47254473 |
T |
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| Q |
219 |
atggaggtaa |
228 |
Q |
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|||||||||| |
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| T |
47254472 |
atggaggtaa |
47254463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 280 - 423
Target Start/End: Complemental strand, 47254412 - 47254269
Alignment:
| Q |
280 |
aattattggtttgattgtttctcaggttcagaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgtcactgctaatatgagaggg |
379 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47254412 |
aatttttggtttgattgtttctcaggttcagaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgttactgctaatatgagaggg |
47254313 |
T |
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| Q |
380 |
atactggttgattggttggttgaggttgctgaagaatacaagct |
423 |
Q |
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| T |
47254312 |
atactggttgattggttggttgaggttgctgaagaatacaagct |
47254269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 419
Target Start/End: Complemental strand, 47243126 - 47243016
Alignment:
| Q |
309 |
agaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgtcactgctaatatgagagggatactggttgattggttggttgaggttgc |
408 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||| | || | || ||||| || | | ||||||||||||||||||||||||| |
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| T |
47243126 |
agaaaaagagaagaccaatgtttggttatatggagaatgttcaaagaggcattacatcaaacatgaggggcacattggttgattggttggttgaggttgc |
47243027 |
T |
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| Q |
409 |
tgaagaataca |
419 |
Q |
| |
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|| ||||||| |
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| T |
47243026 |
agatgaataca |
47243016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 47249974 - 47249841
Alignment:
| Q |
290 |
ttgattgtttctcaggttcagaaaaagagaagaccaatgattggttatattgagaaagttcaaagaggtgtcactgctaatatgagagggatactggttg |
389 |
Q |
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|||| ||||| |||| | ||||||||||||||||||||| |||||||| ||||||| ||||| ||||| | | | || ||||| |||| | |||||| |
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| T |
47249974 |
ttgaatgtttatcagatgcagaaaaagagaagaccaatggttggttatcttgagaatgttcagagaggcatttcatcaaacatgagggggacattggttg |
47249875 |
T |
|
| Q |
390 |
attggttggttgaggttgctgaagaatacaagct |
423 |
Q |
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||||||| ||||||||||| || ||||||||||| |
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| T |
47249874 |
attggttagttgaggttgcagatgaatacaagct |
47249841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 47250107 - 47250060
Alignment:
| Q |
181 |
agccttatgcatctgatatctccaactatcttcgcacaatggaggtaa |
228 |
Q |
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| T |
47250107 |
agccttatgtatctgatatctctgattatcttcgcacaatggaggtaa |
47250060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 5434645 - 5434679
Alignment:
| Q |
389 |
gattggttggttgaggttgctgaagaatacaagct |
423 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
5434645 |
gattggttggttgaagttgctgaagaatacaagct |
5434679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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