View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_1 (Length: 580)
Name: NF14226_high_1
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Complemental strand, 7374378 - 7373830
Alignment:
| Q |
19 |
ctgatgagaatagaattagcttccggagtatcctccttagtatgaacctttgagtcatacaaggttttacaattaaccacactttcttgtcattagcaat |
118 |
Q |
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| T |
7374378 |
ctgatgagaatagaattagcttcgggagtgtcctccttagtatgaacctttgaatcatacaaggctttacaattaaccacactttcttgtcattagcaat |
7374279 |
T |
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| Q |
119 |
ttgagaagtctaagtagtgtcatcgttgcaacacactctatcatggattcatggtcttcttgagcatctttcttttggtcagaactagcatctgcaaaag |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
7374278 |
ttgagaagtctaagtagtatcatcgttgcaacacactctatcatggattcatggtcttcttgagcatctttcttttggccagaactagcatctgcgaaag |
7374179 |
T |
|
| Q |
219 |
gctttgactgcaactagcgattatccttgttgttaagttgatttgcctttattgcttgtattatctgagatgatttgccacccaattcattatctatcac |
318 |
Q |
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| T |
7374178 |
gctttgactgcaactagcgattatccttgttgttaagttgatttgccttaatttcttgtattacatgagatgatttgccacccaagtcatgatctatcac |
7374079 |
T |
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| Q |
319 |
ttcatccgtaacattatgcaaagcataatgattagaagagctaggcttatttgtatcaatcagttcagttatcaccaatggcttatgatgcaagttatca |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
7374078 |
ttcatccgtaacattatgcaaagcataatgattagaagagctaggtttatttgtatcaatcagttcagatatcaccaatgtcttatgatgcaagttatca |
7373979 |
T |
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| Q |
419 |
agatcagtttgaatctctggttttatctgcccagatttcttctgaatgtctaaattgattaattgttaggcttaatttcacttttattttgattcatact |
518 |
Q |
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| T |
7373978 |
agatcagtttgaatctctggttttatctgcccagatttcttctgaatatctaaattgattaattgttaggcttaatttcacttttattttgattcatact |
7373879 |
T |
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| Q |
519 |
gttttttccttgtaaagcaaacccctcattcttttcccttaatttcccc |
567 |
Q |
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| T |
7373878 |
gttttttccttgtaaagtaaacccgtctttcttttcccttaatttcccc |
7373830 |
T |
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