View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_15 (Length: 246)
Name: NF14226_high_15
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 23089551 - 23089491
Alignment:
| Q |
112 |
aataacaatttttcttataaagtttgaagaaaaacaaacggaacttatatatgagaccgag |
172 |
Q |
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| T |
23089551 |
aataacaatttttcgtataaattttgaagaaaaacaaacggaacttatatatgagaccgag |
23089491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 23086259 - 23086319
Alignment:
| Q |
112 |
aataacaatttttcttataaagtttgaagaaaaacaaacggaacttatatatgagaccgag |
172 |
Q |
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|||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
23086259 |
aataacaatttttcgtataaattttgaagaaaaacaaatggaacttatatatgagaccgag |
23086319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 23068066 - 23068008
Alignment:
| Q |
104 |
ttaattgcaataacaatttttcttataaagtttgaagaaaaacaaacggaacttatatat |
163 |
Q |
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|||||| |||||||||||||||||| ||| | ||||||||||||||| |||||||||||| |
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| T |
23068066 |
ttaattacaataacaatttttcttaaaaa-tgtgaagaaaaacaaacagaacttatatat |
23068008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 23071472 - 23071413
Alignment:
| Q |
104 |
ttaattgcaataacaatttttcttataaagtttgaagaaaaacaaacggaacttatatat |
163 |
Q |
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|||||| ||||||||||||||||| ||| | ||||||||||||||| |||||||||||| |
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| T |
23071472 |
ttaattacaataacaatttttcttgaaaaatgtgaagaaaaacaaacagaacttatatat |
23071413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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