View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14226_high_16 (Length: 243)
Name: NF14226_high_16
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 3079191 - 3079002
Alignment:
| Q |
16 |
aattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggtcggcattatatgaatcctctccttgagtatggccatgctgag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
3079191 |
aattctgaaaagttattagtgctttgtcgaatccatattaaagggattattgggaggtctgcattatatgtatcctctccttgaatatggccatgttgag |
3079092 |
T |
|
| Q |
116 |
atataggagttgtctttgatggtagttcatctgtatttaaaataaaacttttatcagtttgaattttatcttattactatatgtgaaata |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3079091 |
atataggagttgtctttgatggtagtccatctgtatttaaaataaaacttttattagtttgaattttatcttattactatatgtgaaata |
3079002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 3093679 - 3093499
Alignment:
| Q |
14 |
ataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggtcggcattatatgaatcctctccttgagtatggccatgctg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| || |
|
|
| T |
3093679 |
ataattctgaaaagttattagtgctttgtcgaatccatattaaagggattattgggaggtctgcattatatgtatcctctccttgaatatggccatgatg |
3093580 |
T |
|
| Q |
114 |
agatataggagttgtctttgatggtagttcatctgtattta-aaataaaacttttatcagtttgaattttatcttattact |
193 |
Q |
| |
|
|||||| ||| ||||||||||||||| | ||||| |||| | ||| | ||||||||| |||||||||||| |||||||||| |
|
|
| T |
3093579 |
agatatgggaattgtctttgatggtattccatctatattaataaaaataacttttattagtttgaattttgtcttattact |
3093499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 4549764 - 4549937
Alignment:
| Q |
14 |
ataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggtcggcattatatgaatcctctccttgagtatggccatgctg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| | || |
|
|
| T |
4549764 |
ataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggaggtctgcattatatgtatcctctccttgagtatggccaggatg |
4549863 |
T |
|
| Q |
114 |
agatataggagttgtctttgatggtagttcatctgtatttaaaataaaacttttatcagtttgaattttatcttatta |
191 |
Q |
| |
|
|||||||||| || ||||||||| |||| |||| |||| | |||||||||| |||||||||||| ||||||| |
|
|
| T |
4549864 |
agatataggaattttctttgatgctagtcgatctatatt----aagaaacttttattagtttgaatttttacttatta |
4549937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University