View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_4 (Length: 476)
Name: NF14226_high_4
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 17820471 - 17820230
Alignment:
| Q |
1 |
tgttttgggaaggaattttctaggcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttac |
100 |
Q |
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| T |
17820471 |
tgtttttggaagggattttctaggcttgtctagcaaagattgttgattagccatagtgataagtagctactagtggttgctcactatgatatttgtttac |
17820372 |
T |
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| Q |
101 |
ataatcatccttatatagaccnnnnnnnnnnttatattttgtagaatttaatacaaataagagaaattccatgtggaagacattgattaattgattaatc |
200 |
Q |
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| T |
17820371 |
ataatcatccttatatagacca-------------attttgtagaattttatacaaataagagaaattccaagtggaagacattgattaattgattaatt |
17820285 |
T |
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| Q |
201 |
agcattaaagtcgcagctaggagaggaacatgtgggagactaatagatccatctt |
255 |
Q |
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| T |
17820284 |
tgcattaaagtggcagctaggagaggaacaagtgggagactaatagagccatctt |
17820230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17776007 - 17775947
Alignment:
| Q |
1 |
tgttttgggaaggaattttctaggcttgtctagcaaagattgttgattagccatagtgata |
61 |
Q |
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|||||| |||| | ||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
17776007 |
tgtttttggaatggattttcttggcttgtctagcaaagattgttggatagccatactgata |
17775947 |
T |
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