View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_5 (Length: 468)
Name: NF14226_high_5
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Complemental strand, 12630823 - 12630382
Alignment:
| Q |
16 |
caatgggcgcattcgatcattgttagagttccaagtgacttttaaattctggtctaccattgacagcctattaaggtagccaactttagaccccacctta |
115 |
Q |
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| T |
12630823 |
caatgggcgcattcaatcgttgttagagttccaagtgacttttaaatactggtctaccattgacagcctattaaggtagccaactttagaccccacctta |
12630724 |
T |
|
| Q |
116 |
aaatgagcaagttcgaataatctagtaatgcctgatccatgaagttttgagcaaatagaaacttaagaaggtcccgactttcgtcagagctgaacagaca |
215 |
Q |
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| T |
12630723 |
aaatgagcaagttcgaataatctagtaatgcctgatccatgaagttttgagcaaatagaaacttaagaaggtcccgactttcgtcagagctgaacaggca |
12630624 |
T |
|
| Q |
216 |
ggcaggtaatcatatccagagagaaaaataatatataatagtgatccacaagttagcagagtattaccttaatgtcagggagagttaggataaactcgcc |
315 |
Q |
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| T |
12630623 |
ggcaggtaatcatatccagagagaaaaataatatataatagtgatccacaagttagcagagtattaccttaatgtcagggtgagttaggataaactcgcc |
12630524 |
T |
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| Q |
316 |
aagagaagggtcaagggtgaaaccattaacaccacttccagtggttatcacaaactgcaatggagtaattaagcattgtaattttagaatgaagacataa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12630523 |
aagagaagggtcaagggtgaaaccattaacaccacttccagtggttatcacaaactgcaatggagtaattaagcattgtaattttagaatgaagacataa |
12630424 |
T |
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| Q |
416 |
aaaatcgcgatcaatgaacaagaatacaagtttattaatatt |
457 |
Q |
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| T |
12630423 |
aaaatcgcgatcaatgaacaagaatacaagtttattaatatt |
12630382 |
T |
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