View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_6 (Length: 405)
Name: NF14226_high_6
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 2820380 - 2820304
Alignment:
| Q |
313 |
ttgtgtattctgttatgtgttgttgttgcgggaaatcccctgtcctacttgtgccggctgtaacaatgatttggact |
389 |
Q |
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| T |
2820380 |
ttgtgtattctgttatgtgttgttgttgctggaaatcccctgtcctacttgtgccggctgtaacaatgatttggact |
2820304 |
T |
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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 17819388 - 17819486
Alignment:
| Q |
1 |
ttgttcttgaaaatgtcatcaaataactttgttttttat---gaagactatagatatcaatgagagttgtcttgtcaacttttatattcattcatatatg |
97 |
Q |
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| T |
17819388 |
ttgttcttgtaaatgtcatcaaataactttgttttttatgaagaagactatagatatcaaggagag-----ttgtcaacttttatattcattcatatatg |
17819482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 17819772 - 17819836
Alignment:
| Q |
256 |
gcgtaaatgcagtagtgttcctagtttgaatgtaggagcaaatatttagtatataggttgtgtat |
320 |
Q |
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| T |
17819772 |
gcgtaaatgcagtagtgtacctagtttgaatgtaggagcaaagattcagtacataggttatgtat |
17819836 |
T |
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