View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_high_8 (Length: 370)
Name: NF14226_high_8
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 25939 - 26286
Alignment:
| Q |
15 |
agattcaggtcggtgggcaaatccatgacctctaccagggaatatcactactttggagccactatcaattgtagtctgaatattttttatttcacttaca |
114 |
Q |
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| T |
25939 |
agattcaggtcggtgggcaaatccatgacctctaccagggaatatcactactttggagccactatcaattgtagtctgaatattttttatttcacttaca |
26038 |
T |
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| Q |
115 |
gcacaaattgggtcattgtcccctaaaataaacaagacgggaacttttacatcagaagcaacaagcgaatctatccttgtaccataaaaggagattccag |
214 |
Q |
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| T |
26039 |
gcacaaattgggtcattgtcccctaaaataaacaagacgggaacttttacatcagaagcaacaagcgaatctatccttgtaccataaaaggagattccag |
26138 |
T |
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| Q |
215 |
tgccgaagcaagcatcttggtcttggcctaggccccctaaccctccgcctcccccaaagcaaaacccaattatgccaactttcctggaaactccttccct |
314 |
Q |
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| T |
26139 |
tgccgaagcaagcatcttggtcttgggctaggacctctaacactttgcctcctccaaagcaaaaaccaattatgccaagttttctggaaactccttcagt |
26238 |
T |
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| Q |
315 |
cacgaattcatctgccagccactctgtccacgcggtaatgtcctttgc |
362 |
Q |
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| T |
26239 |
catgaattcatctgccagccactctgtccacgcggtaatgtcttttgc |
26286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 362
Target Start/End: Original strand, 21352590 - 21352769
Alignment:
| Q |
186 |
tatccttgtaccataaaaggagattccagtgccgaagcaagcatcttggtcttggcctaggccccctaaccctccgcctcccccaaagcaaaacccaatt |
285 |
Q |
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| T |
21352590 |
tatccttgtaccaaaaaaggagagtccaatgccaaaacaagcatcttggtcttggcctagcacctctaatactttgctgcgtccaaagcaaaaaccaatt |
21352689 |
T |
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| Q |
286 |
atgccaactttcctggaaactccttc---cctcacgaattcatctgccagccactctgtccacgcggtaatgtcctttgc |
362 |
Q |
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| T |
21352690 |
acgccaagttttttgaaaactccttcagtagtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgc |
21352769 |
T |
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