View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14226_low_1 (Length: 644)
Name: NF14226_low_1
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_1 |
 | |
|
| [»] scaffold1460 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 14859227 - 14858634
Alignment:
| Q |
1 |
gtgatgaaaaatattttaggaacctatgaagttacttttgggcaagctattagcgtacccaagtccaaagtgtactataacaaccgtgtggaaacagcac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14859227 |
gtgatgaataatattttaggaacctatgaagttacttttgggtaggctattagcttacccaagtccaaagtgtactataacaaccgtgtggaaacaacac |
14859128 |
T |
|
| Q |
101 |
taagagaatccatcaccaatactctaggtgttcgtgctgttatgggaacaagaaaatatcttggtcttccttcgattatggggcgcagtaaggaagcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14859127 |
taagagaatccatcaccaatactctaggtgt-catgctgttttggggacaagaaaatatcttggtcttccttcgattatggggcgcagtaaggaagcaac |
14859029 |
T |
|
| Q |
201 |
ttttggctttatcaaggatcggatatggcataagattaatagttaaagcaacaaatgcttatctaaaccagggagagaagttatgataaaatcggcactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
14859028 |
ttttggctttatcaaggatcggatatgacataagattaatagttaaagcaacaaatgcttatctaaaccaggaagagaagttatgataaaatcggtactc |
14858929 |
T |
|
| Q |
301 |
caacctatcccttcttattttatgatcatatatctccatcgtaataaatttattgatggcatagaaaaaatgataaatgctttttggtggggtcatggta |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14858928 |
caacctatcctttcttattttatgatcatatatctccatcctaataaatttattgatggcataaaaaaaatgataaatgctttttggtggggtcatggcg |
14858829 |
T |
|
| Q |
401 |
gttcaatgagaaaaggcatgcactggttgtcttggaaacattgtcttcttaaattttatggaggaatgggatccaaggatcttacttcctttaatatggc |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
14858828 |
gttcaatgagaaaagacatgcactggttgtcttggaaacattgtcttcttaaattttatggaggaatgggatccaaggatattacttcctttaatgtggc |
14858729 |
T |
|
| Q |
501 |
aatgcttgataaacaaggttagaagtttcaaacggataccactagccttatttctagactatttaaggcttgttatttttctaacaatgatttta |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14858728 |
aatgcttgataaacaaggttagaagtttcaaacagataccactagccttatttctagactatttaaggcttgttatttttctaacaatgatttta |
14858634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 587 - 644
Target Start/End: Complemental strand, 14858295 - 14858238
Alignment:
| Q |
587 |
atgattttataggttcaagactaaaaagtaacccgggatatgcgtggaaaagcatttt |
644 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
14858295 |
atgattttataggttcaagactaagaagtaacctgggctatgcgtggaaaagcatttt |
14858238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 435
Target Start/End: Original strand, 29983016 - 29983086
Alignment:
| Q |
365 |
aaaaaatgataaatgctttttggtggggtcatggtagttcaatgagaaaaggcatgcactggttgtcttgg |
435 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||| | | |||||||| ||| ||||| |||||||||||| |
|
|
| T |
29983016 |
aaaaaattataaattctttttggtggggccatggatgattaatgagaagagggatgcattggttgtcttgg |
29983086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 30654188 - 30653593
Alignment:
| Q |
1 |
gtgatgaaaaatattttaggaacctatgaagttacttttgggcaagctattagcgtacccaagtccaaagtgtactataacaaccgtgtggaaacagcac |
100 |
Q |
| |
|
|||||||||||||| |||| || ||||||| |||||||| | | ||||||||| ||||||||| |||| | ||| ||||||||| || | | |
|
|
| T |
30654188 |
gtgatgaaaaatatattagccacatatgaagctacttttgcgtaggctattagcttacccaagtttgaagt-------agcaatcgtgtggaagcatcgc |
30654096 |
T |
|
| Q |
101 |
taagagaatccatcaccaatactctaggtgttcgtgctgttatgggaacaagaaaatatcttggtcttccttcgattatggggcgcagtaaggaagcaac |
200 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
30654095 |
aaagagactccataaccaatactttaggtgtccgtactgttatgggaacaggaaaatatcttggtctcccttcgatggtggggtgcagtaaggaagcaac |
30653996 |
T |
|
| Q |
201 |
ttttggctttatcaaggatcggatatggcataagattaatagttaaagcaacaaatgcttatctaaaccagggagagaagttatgataaaatcggcactc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| || ||||| ||||||||| |||||||||| ||||||| |||||||| ||| |
|
|
| T |
30653995 |
ttttggctttatcaaggatcacatatggcacaagattaatagttggttcagaaaatgtttatctaaagcagggagagaggttatgacaaaatcggtactt |
30653896 |
T |
|
| Q |
301 |
caacctatcccttcttattttatgatcatatatctccatcgtaataaatttattgatggcatagaaaaaatgataaatgctttttggtggggtcatggta |
400 |
Q |
| |
|
||| ||||||||||||| |||||| |||| |||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
30653895 |
caatctatcccttcttacattatgagcatacatctcctccctaataaattgattgatggcatagaaaaaattataaatgctttttggtggtgtcatggt- |
30653797 |
T |
|
| Q |
401 |
gttcaatgagaaaaggcatgcactggttgtctt-ggaaacattg--tcttcttaaattttatggaggaatgggatccaaggatcttacttcctttaatat |
497 |
Q |
| |
|
|| | ||||||||| |||||||||||||||| ||||| |||| | ||| ||| ||| |||||| ||||||| | ||||||||||| ||||||| | |
|
|
| T |
30653796 |
gtaacacgagaaaaggtatgcactggttgtcttgggaaagattgtttgttcccaaaattt-tggaggtatgggattcgaggatcttactaactttaatgt |
30653698 |
T |
|
| Q |
498 |
ggcaatgcttgataaacaaggttagaagtttcaaacggataccactagccttatttctagactatttaaggcttgttatttttctaacaatgattttata |
597 |
Q |
| |
|
||| ||||||| |||||| |||| ||||||| |||| | |||| ||||||| || |||| | ||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
30653697 |
ggcgatgcttggtaaacagggttggaagttttaaacaaacaccaatagccttgttattagattttttaaagctcattattatcctaacaatgattttata |
30653598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 51085338 - 51085214
Alignment:
| Q |
310 |
ccttcttattttatgatcatatatctccatcgtaataaatttattgatggcatagaaaaaatgataaatgctttttggtggggtcatggtagttcaatga |
409 |
Q |
| |
|
||||||||| |||||| |||||||||| | ||| ||||| |||||||| || |||||| |||||||| ||||||||||||| ||||| |||| | || |
|
|
| T |
51085338 |
ccttcttatgttatgagtatatatctcctccctaacaaattgattgatgggattgaaaaa-tgataaatactttttggtgggggcatgggggttcgagga |
51085240 |
T |
|
| Q |
410 |
gaaaaggcatgcactggttgtcttgg |
435 |
Q |
| |
|
| ||||| ||||| |||||||||||| |
|
|
| T |
51085239 |
ggaaaggtatgcattggttgtcttgg |
51085214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 25397503 - 25397428
Alignment:
| Q |
360 |
catagaaaaaatgataaatgctttttggtggggtcatggtagttcaatgagaaaaggcatgcactggttgtcttgg |
435 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||| ||| ||| |||| |
|
|
| T |
25397503 |
catagaaaaaatgataaatgctttttgatggggacatggagcatcaatgagaagagggatgcattggatgtattgg |
25397428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 15231082 - 15231138
Alignment:
| Q |
343 |
aataaatttattgatggcatagaaaaaatgataaatgctttttggtggggtcatggt |
399 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||||| || ||||| |
|
|
| T |
15231082 |
aataaattagttgatgcaattgaaaaaatgataaatgctttttggtggcgtaatggt |
15231138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 283 - 574
Target Start/End: Complemental strand, 37369862 - 37369568
Alignment:
| Q |
283 |
atgataaaatcggcactccaacctatcccttcttattttatgatcatatatctccatcgtaataaatttattgatggcatagaaaaaatgataaatgctt |
382 |
Q |
| |
|
|||||||||| || ||||||| ||| ||| |||||| || ||| | ||||||||| | | | ||||| || || |||| ||||||||||| ||| | |
|
|
| T |
37369862 |
atgataaaattggtactccaatctaccccatcttatattttgaacgtatatctcctccctcacaaattgatatatcacatataaaaaatgatagatgttc |
37369763 |
T |
|
| Q |
383 |
tttggtggggtcatggtagttcaatgagaaaaggcatgcactggttgtcttggaaacattgtcttctt---aaattttatggaggaatgggatccaagga |
479 |
Q |
| |
|
||| |||||| |||| | |||| |||||||| |||||||| |||||||||||||| || || || |||| ||||||||| ||| ||| ||||| |
|
|
| T |
37369762 |
ttttgtggggacatgatggttctatgagaaagggcatgcatcggttgtcttggaaaagtttgattgttcacaaatattatggaggtatgagatttaagga |
37369663 |
T |
|
| Q |
480 |
tcttacttcctttaatatggcaatgcttgataaacaaggttagaagtttcaaacggataccactagccttatttctagactatttaaggcttgtt |
574 |
Q |
| |
|
||| |||| |||| | |||| |||| || |||||| || | ||||||||||||||| ||||||||||| || ||||| | ||||| ||||||| |
|
|
| T |
37369662 |
ccttgcttcttttattgtggcgatgcctggtaaacaggggtgaaagtttcaaacggatcccactagccttgttactagattgtttaaagcttgtt |
37369568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 10326393 - 10326346
Alignment:
| Q |
352 |
attgatggcatagaaaaaatgataaatgctttttggtggggtcatggt |
399 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
10326393 |
attgatgccattgagaaaatgataaatgctttttggtggggtcatggt |
10326346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 5612482 - 5612436
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatggtagttcaat |
407 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
5612482 |
atagagaagatgatgaatgctttttggtggggtcatggtggttcaat |
5612436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 398
Target Start/End: Original strand, 6559968 - 6560002
Alignment:
| Q |
364 |
gaaaaaatgataaatgctttttggtggggtcatgg |
398 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6559968 |
gaaaaaatgataaattctttttggtggggtcatgg |
6560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 25750274 - 25750236
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatggt |
399 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25750274 |
atagaaaaaatgatgaatgctttttggtggggtcatggt |
25750236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1460 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1460
Description:
Target: scaffold1460; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 779 - 742
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatgg |
398 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
779 |
atagaaaaaatgatgaatgctttttggtggggtcatgg |
742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 218542 - 218597
Alignment:
| Q |
490 |
tttaatatggcaatgcttgataaacaaggttagaagtttcaaacggataccactag |
545 |
Q |
| |
|
|||||| |||||||||||| ||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
218542 |
tttaatgtggcaatgcttggaaaacagggttggaagtttcaaactgataccactag |
218597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 13110 - 13072
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatggt |
399 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
13110 |
atagaaaaaatgatgaacgctttttggtggggtcatggt |
13072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 399
Target Start/End: Complemental strand, 15173 - 15139
Alignment:
| Q |
365 |
aaaaaatgataaatgctttttggtggggtcatggt |
399 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
15173 |
aaaaaatgatcaatgctttttggtggggtcatggt |
15139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 21700850 - 21700813
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatgg |
398 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
21700850 |
atagaaataatgatgaatgctttttggtggggtcatgg |
21700813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 34933636 - 34933673
Alignment:
| Q |
361 |
atagaaaaaatgataaatgctttttggtggggtcatgg |
398 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
34933636 |
atagaaaaaatgatgaatgctttctggtggggtcatgg |
34933673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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