View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_low_11 (Length: 343)
Name: NF14226_low_11
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 3308365 - 3308058
Alignment:
| Q |
19 |
cctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttgtggaagaggaagagg |
118 |
Q |
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| T |
3308365 |
cctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttgtggaagaggaagagg |
3308266 |
T |
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| Q |
119 |
atggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataatcattttataatggc |
218 |
Q |
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| T |
3308265 |
atggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataatcattttataatggc |
3308166 |
T |
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| Q |
219 |
ttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggtaaccacaaaaatcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308165 |
ttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggtaaccacaaaaatcca |
3308066 |
T |
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| Q |
319 |
tgttcatt |
326 |
Q |
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|||||||| |
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| T |
3308065 |
tgttcatt |
3308058 |
T |
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