View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_low_13 (Length: 331)
Name: NF14226_low_13
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 23089788 - 23089694
Alignment:
| Q |
188 |
gtctataattaacgtcaattgaatactttctccgtttatatatataaacacatatttgattaaaaatttgtctttaaatataaacacgtcttcaa |
282 |
Q |
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| T |
23089788 |
gtctataattaacgtcaattgaatactttctccgtttatatatataaacacatatttgattaaaaatttgtctttaaagataaacatgtcttcaa |
23089694 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 8077174 - 8077253
Alignment:
| Q |
45 |
agcattaggctcattagtagatctcaattcaatttgtttgttatactacttttgttttcatgttgtattacccacttagg |
124 |
Q |
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| T |
8077174 |
agcattaggctcattactgaatctcaatccgatttgtttgttataccacttttgttttcatgttttattacccgcttagg |
8077253 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 37037437 - 37037492
Alignment:
| Q |
217 |
ctccgtttatatatataaacacatatttgattaaaaatttgtctttaaatataaac |
272 |
Q |
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| T |
37037437 |
ctccgtctttatatataagcacctatttgagtaaaaatttgtctataaatataaac |
37037492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 14528121 - 14528092
Alignment:
| Q |
242 |
tttgattaaaaatttgtctttaaatataaa |
271 |
Q |
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| T |
14528121 |
tttgattaaaaatttgtctttaaatataaa |
14528092 |
T |
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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 31583553 - 31583602
Alignment:
| Q |
224 |
tatatatataaacacatatttgattaaaaatttgtctttaaatataaaca |
273 |
Q |
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| T |
31583553 |
tatatatataaacatttatttaactaaaaatttgtttttaaatataaaca |
31583602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 48609393 - 48609439
Alignment:
| Q |
226 |
tatatataaacacatatttgattaaaaatttgtctttaaatataaac |
272 |
Q |
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| T |
48609393 |
tatatctaagcacatttttgactaaaaatttgtctttaaatataaac |
48609439 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Complemental strand, 35794986 - 35794957
Alignment:
| Q |
242 |
tttgattaaaaatttgtctttaaatataaa |
271 |
Q |
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| T |
35794986 |
tttgattaaaaatttgtctttaaatataaa |
35794957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 15457690 - 15457734
Alignment:
| Q |
228 |
tatataaacacatatttgattaaaaatttgtctttaaatataaac |
272 |
Q |
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| T |
15457690 |
tatataaacacttatttgaataaaaatgtgtccttaaatataaac |
15457734 |
T |
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