View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14226_low_19 (Length: 239)

Name: NF14226_low_19
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14226_low_19
NF14226_low_19
[»] chr7 (4 HSPs)
chr7 (1-229)||(25170193-25170420)
chr7 (12-78)||(38444477-38444542)
chr7 (26-67)||(19532537-19532577)
chr7 (6-47)||(43359618-43359659)
[»] chr1 (3 HSPs)
chr1 (12-87)||(46510576-46510652)
chr1 (25-87)||(2118507-2118568)
chr1 (4-49)||(41676758-41676803)
[»] chr5 (2 HSPs)
chr5 (4-47)||(38566537-38566580)
chr5 (44-92)||(43175828-43175876)
[»] chr6 (5 HSPs)
chr6 (24-78)||(10117958-10118012)
chr6 (44-78)||(34556464-34556498)
chr6 (2-47)||(6664627-6664672)
chr6 (10-47)||(12145462-12145499)
chr6 (26-71)||(13685633-13685678)
[»] chr8 (3 HSPs)
chr8 (13-77)||(29977341-29977403)
chr8 (12-78)||(4652433-4652498)
chr8 (5-42)||(366160-366197)
[»] chr3 (5 HSPs)
chr3 (26-78)||(24175656-24175707)
chr3 (1-47)||(4525149-4525194)
chr3 (26-67)||(15444892-15444932)
chr3 (7-47)||(9326639-9326679)
chr3 (5-48)||(15288630-15288674)
[»] scaffold0223 (1 HSPs)
scaffold0223 (12-78)||(28179-28244)
[»] chr2 (1 HSPs)
chr2 (12-78)||(8778325-8778390)
[»] scaffold0071 (1 HSPs)
scaffold0071 (26-67)||(17261-17301)
[»] chr4 (2 HSPs)
chr4 (6-47)||(2717257-2717298)
chr4 (26-67)||(53849976-53850016)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25170420 - 25170193
Alignment:
Q  1 tttcgtcagcatttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcattttcgatccctagaaatgcggnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||          
T  25170420 tttcgtcagcatttttagtctccgtaaaattttccatcaacattttttaatctttgtaaaaaatttcatcagtattttcgatccctggaaatgct-aaaa 25170322  T
Q  101 nnnnntgttatccagactataagtcataattgattcctattattactgtttgaatttgtataatcatttacaatatgatttgatttcttaatcataaatt 200  Q
         ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25170321 gaaaatgttatccatactataagtcataattgattcatattattactgtttgaacttgtgtaatcatttacaatatgatttgatttcttaatcataaatt 25170222  T
Q  201 atctctcatgttaaatatttgaccctatg 229  Q
    |||||||||||||||| ||||||||||||    
T  25170221 atctctcatgttaaatgtttgaccctatg 25170193  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 38444477 - 38444542
Alignment:
Q  12 tttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    ||||||||| | ||||||||||||||||| | |||||| ||||| |||||| |||||| ||||||||    
T  38444477 tttttagtccctgtaaaattttccatcaata-tttttagtccttataaaaattttcataagcatttt 38444542  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 19532537 - 19532577
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttc 67  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  19532537 aaaattttccatcaaca-tttttagtccttgtaaaaaatttc 19532577  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 43359618 - 43359659
Alignment:
Q  6 tcagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    |||| |||||||||| | ||||||||||||||||||||||||    
T  43359618 tcagtatttttagtccctgtaaaattttccatcaacattttt 43359659  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 46510652 - 46510576
Alignment:
Q  12 tttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaattt-catcagcattttcgatcccta 87  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||| ||||||    
T  46510652 tttttagtccctgtaaaattttccatcaacattttttagtccttgtaaaaattttacgtcagcattttcggtcccta 46510576  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 2118568 - 2118507
Alignment:
Q  25 taaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcattttcgatcccta 87  Q
    ||||||||||||||| ||||||| ||||||| ||||||||| ||||| |||||| | ||||||    
T  2118568 taaaattttccatcagcattttt-aatccttataaaaaattccatcaacatttttggtcccta 2118507  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 41676803 - 41676758
Alignment:
Q  4 cgtcagcatttttagtctccgtaaaattttccatcaacatttttta 49  Q
    ||||||||||||||||| |  |||||||||||||||| ||||||||    
T  41676803 cgtcagcatttttagtccctataaaattttccatcaatatttttta 41676758  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 38566537 - 38566580
Alignment:
Q  4 cgtcagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  38566537 cgtcagcatttttagtccctgtaaaattttccatcaacattttt 38566580  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 43175876 - 43175828
Alignment:
Q  44 tttttaatccttgtaaaaaatttcatcagcattttcgatccctagaaat 92  Q
    |||||| || |||||||||||||||||||||||||  || |||||||||    
T  43175876 tttttagtcattgtaaaaaatttcatcagcatttttaattcctagaaat 43175828  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 10117958 - 10118012
Alignment:
Q  24 gtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    |||||||||||| ||||||||||||  ||| ||||||||| ||||||||||||||    
T  10117958 gtaaaattttccgtcaacatttttttgtccctgtaaaaaaattcatcagcatttt 10118012  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 34556464 - 34556498
Alignment:
Q  44 tttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    |||||| ||||||||||||||||||||||||||||    
T  34556464 tttttagtccttgtaaaaaatttcatcagcatttt 34556498  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 6664627 - 6664672
Alignment:
Q  2 ttcgtcagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    ||||||||||||||||||    ||||||||||||||||||||||||    
T  6664627 ttcgtcagcatttttagttcttgtaaaattttccatcaacattttt 6664672  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 12145499 - 12145462
Alignment:
Q  10 catttttagtctccgtaaaattttccatcaacattttt 47  Q
    ||||||||||| || |||||||||||||||||||||||    
T  12145499 catttttagtccccataaaattttccatcaacattttt 12145462  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 13685678 - 13685633
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttcatca 71  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||||    
T  13685678 aaaattttccatcaacattttttagtccctataaaaattttcatca 13685633  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 29977341 - 29977403
Alignment:
Q  13 ttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcattt 77  Q
    ||||||||| |||||||||||||||||| |||||  | |  ||||||||||||||||||||||||    
T  29977341 ttttagtcttcgtaaaattttccatcaagatttt--agtttttgtaaaaaatttcatcagcattt 29977403  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4652498 - 4652433
Alignment:
Q  12 tttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    |||||||||||  ||||||||| ||||| ||||||| | ||| | ||||||||||||||||||||||    
T  4652498 tttttagtctctataaaatttttcatcagcattttt-agtccctataaaaaatttcatcagcatttt 4652433  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 366160 - 366197
Alignment:
Q  5 gtcagcatttttagtctccgtaaaattttccatcaaca 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  366160 gtcagcatttttagtcactgtaaaattttccatcaaca 366197  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 24175707 - 24175656
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||| |||||    
T  24175707 aaaatttctcatcaacattttt-aatccttgtaaaaaatttcatcagtatttt 24175656  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4525194 - 4525149
Alignment:
Q  1 tttcgtcagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  4525194 tttcgtcaacatttttagtctctgtaaa-ttttccatcaacattttt 4525149  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 15444932 - 15444892
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttc 67  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  15444932 aaaattttccatcaacat-ttttagtccttgtaaaaaatttc 15444892  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9326679 - 9326639
Alignment:
Q  7 cagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    ||||||||||||||||  ||||||||||||||| |||||||    
T  9326679 cagcatttttagtctctataaaattttccatcagcattttt 9326639  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 15288630 - 15288674
Alignment:
Q  5 gtcagcatttttagtctccgt-aaaattttccatcaacatttttt 48  Q
    ||||||||||||||||||  | |||||||||||||||||||||||    
T  15288630 gtcagcatttttagtctcaatcaaaattttccatcaacatttttt 15288674  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 28179 - 28244
Alignment:
Q  12 tttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    ||||||||| | |||||||||||| ||| ||||||| | ||||| |||||| |||||||||||||||    
T  28179 tttttagtccctgtaaaattttccgtcatcattttt-agtccttataaaaattttcatcagcatttt 28244  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 8778325 - 8778390
Alignment:
Q  12 tttttagtctccgtaaaattttccatcaacattttttaatccttgtaaaaaatttcatcagcatttt 78  Q
    ||||||||| | ||||||| |||| ||||||||||| | ||||||||||||||  ||||||||||||    
T  8778325 tttttagtccctgtaaaatattccgtcaacattttt-agtccttgtaaaaaatagcatcagcatttt 8778390  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 17261 - 17301
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttc 67  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  17261 aaaattttccatcaaca-tttttagtccttgtaaaaaatttc 17301  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 2717298 - 2717257
Alignment:
Q  6 tcagcatttttagtctccgtaaaattttccatcaacattttt 47  Q
    ||||||||||||||| ||||||||||||| | ||||||||||    
T  2717298 tcagcatttttagtcaccgtaaaattttctaccaacattttt 2717257  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 53850016 - 53849976
Alignment:
Q  26 aaaattttccatcaacattttttaatccttgtaaaaaatttc 67  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  53850016 aaaattttccatcaacat-ttttagtccttgtaaaaaatttc 53849976  T

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