View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14226_low_21 (Length: 201)
Name: NF14226_low_21
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 16390105 - 16389941
Alignment:
| Q |
20 |
aagacgagggcttaaactcctcaggtacgctttcatgtttaattgtcatacttttgaagtgtattaattatagaaaattcatcttcgccatgacagtaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16390105 |
aagacgagggcttaaactcctcaggtacgctttcatgtttaattgtcatacttttgaagtgtattaattatagaaaattcatcttcgccatgacagtaag |
16390006 |
T |
|
| Q |
120 |
ttttatttgatgaatgttaggatatttttagaaaacttatttagcattaatgcttttgaatgtat |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16390005 |
ttttatttgatgaatgttaggatatttttagaaaacttatttagcattaatgcttttgaatgtat |
16389941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 11706714 - 11706668
Alignment:
| Q |
130 |
tgaatgttaggatatttttagaaaacttatttagcattaatgctttt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11706714 |
tgaatgttaggatatttttagaaaacttatttagcattaaagctttt |
11706668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 11706862 - 11706813
Alignment:
| Q |
21 |
agacgagggcttaaactcctcaggtacgctttcatgtttaattgtcatac |
70 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11706862 |
agacgagggcttaaactcctcaggtacactttcatgtttaattgttatac |
11706813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University