View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_low_3 (Length: 527)
Name: NF14226_low_3
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 737317 - 737681
Alignment:
| Q |
10 |
ataattctgcagtggagggtatcaaaatttcattagatgtaatatagcatggctatctggattatgtaaattttattagtataccactagtcttcaagat |
109 |
Q |
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| T |
737317 |
ataattctgcactggagggtatcaaaatttcattagatataatataacatggctatctggattatgtaaattttattagtataccactagtcttcaagat |
737416 |
T |
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| Q |
110 |
atgatggtgcatgcacaagactaaatgcatccataagttttattggtgaaaatattggcatgcttcgagtaatattagtagagtgttcccttcagaaaat |
209 |
Q |
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| T |
737417 |
atgatggtgcatgcacaagactaaatgtatccataagttttattggtgaaaatattggcatgcttcgagtaatattagtagagtgttcccttcagaaaat |
737516 |
T |
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| Q |
210 |
tgaactgagtgctgaagaccaaactaagtggtaattccacaaatttagtaaatgatttgaaactcgaaaggtttttaggcaggctcattataggagcaaa |
309 |
Q |
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| T |
737517 |
tgaactgagtactgaagaccaaactaagtggtaattccacaaatttagtaaatgatttgaaactcgaaaggtttttaggcaggctcattataggagcaaa |
737616 |
T |
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| Q |
310 |
atttgaaaggtttactctgtgtatggtacattacatgcaaaaccaataatgagtgaaacataatt |
374 |
Q |
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| T |
737617 |
atttgaaaggtttactctgtgtatggtacattacatgcaaaaccaataatgagtgaaacataatt |
737681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 508
Target Start/End: Original strand, 737725 - 737816
Alignment:
| Q |
418 |
tcaactgattcaacacta-gccaccaatcaaacaaaagaaccagattctgaatcatgtcatataaaaaacttaaaataaatgtagtactagg |
508 |
Q |
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| T |
737725 |
tcaactgattcaacactaagccaccaatcaaacaaaagaaccagattctgaatcatgtcatataaaaaacttaaaataaatgtagtactagg |
737816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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