View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14226_low_4 (Length: 486)
Name: NF14226_low_4
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 14857544 - 14857788
Alignment:
| Q |
14 |
gtcttttgttgccataacttaaggttcattcgttttcaaatactctacaagattgtggcaaagagagaactttgagacggattaagttgagacaagag-c |
112 |
Q |
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| T |
14857544 |
gtcttttgttgccataacttaaggttcattcgtttccaaatactccacaagattgtggcaaagagagaactttgagacggattaagttgagacaagaggc |
14857643 |
T |
|
| Q |
113 |
taaaaatcattgcatccatgttataagttttccttaatgccctctcaatcttatcctataaattaacctctagccaaagatgcacatcaccaggacactc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14857644 |
taaaaatcattgcatccatgttataagttttccttaatgccctctcaatcttatcctataaattaacctctcgccaaagatgcacatcaccaggacactc |
14857743 |
T |
|
| Q |
213 |
taagagaatatgaatattatcttcaaaattacttccacaaagtac |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14857744 |
taagagaatatgaatattatcttcaaaattacttccacaaagtac |
14857788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 255 - 486
Target Start/End: Original strand, 14857996 - 14858230
Alignment:
| Q |
255 |
tactcaagattaattgagttgtatttggatcaaacaaattata---tatgaaaggcgcattacataccttatcagactgttcaatgatgtacttcacctt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
14857996 |
tactcaagattaattgagttgtatttggatcaaacaaattataatatatgaaaggcgcattccataccttatcagactgttcaatgatgtccttcacctt |
14858095 |
T |
|
| Q |
352 |
aatatgggctaaaggcgcaaaagtgggattgtcgtatgcaagggacatgccatttgcaatccagggtgcaccaaaaagacggaatgctaatacatgtatc |
451 |
Q |
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| T |
14858096 |
aatatgggctaaaggcgcaaaagtgggattgtcgtatgcaagggacatgccatttgcaatccagggtgcaccaaaaaaacggaatgctaatacatgcacc |
14858195 |
T |
|
| Q |
452 |
aacacgccatcttgcacctttttcataactatttt |
486 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14858196 |
tacacgccatcttgcacctttttcataactatttt |
14858230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 10214958 - 10214732
Alignment:
| Q |
20 |
tgttgccataacttaaggttcattcgttttcaaatactctacaagattgtggcaaagagagaactttgagacggattaagttgagacaagag-ctaaaaa |
118 |
Q |
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||||||||||| |||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
10214958 |
tgttgccataa--taaggttcttacgttttcaaatgctccacaagattgtggcaaagagagaactttgagacggattaggttgagacaagagactaaaaa |
10214861 |
T |
|
| Q |
119 |
tcattgcatccatgttataagttttccttaatgccctctcaatcttatcctataaattaacctctagccaaagatgcacatcaccaggacactctaagag |
218 |
Q |
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||| |||||||||||||| || |||||||||| | |||||||||||| |||||||||||||| ||||| ||||| | ||||| |||||||||| || |
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| T |
10214860 |
tcacagcatccatgttatagtttagccttaatgccttgtcaatcttatcccataaattaacctctctccaaatatgcatagcaccatgacactctaaaag |
10214761 |
T |
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| Q |
219 |
aatatgaatattatcttcaaaattacttc |
247 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
10214760 |
aatatgaatattatcttcaaaattacttc |
10214732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 30652838 - 30653071
Alignment:
| Q |
20 |
tgttgccataacttaaggttcattcgttttcaaatactctacaagattgtggcaaagagagaactttgagacggattaagttgagacaagag-ctaaaaa |
118 |
Q |
| |
|
||||||||||||||||| ||| | || || ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||| |
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| T |
30652838 |
tgttgccataacttaag-ttcctacgcttccaaatactccacaagattgtggcaaagagagaactttaagacatattaagttgagacaaaaggctaaaaa |
30652936 |
T |
|
| Q |
119 |
tcattgcatccatgttataagttttccttaatgccctctcaatcttatcctataaattaacctctagccaaagatgcacatcaccaggacactctaagag |
218 |
Q |
| |
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||| |||||||||||||| ||| ||||||| |||| |||||||||||| |||||||||||||| |||||| ||||| |||| || |||||| ||| || |
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| T |
30652937 |
tcaccgcatccatgttatagttttgccttaataccctgtcaatcttatcccataaattaacctctcgccaaatatgcatatca-catgacactataaaag |
30653035 |
T |
|
| Q |
219 |
aatatgaatattatcttcaaaattacttccacaaag |
254 |
Q |
| |
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| || |||||||||||||| |||||||||||||||| |
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| T |
30653036 |
actacgaatattatcttcataattacttccacaaag |
30653071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 282 - 426
Target Start/End: Original strand, 30653345 - 30653489
Alignment:
| Q |
282 |
gatcaaacaaattatatatgaaaggcgcattacataccttatcagactgttcaatgatgtacttcaccttaatatgggctaaaggcgcaaaagtgggatt |
381 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||||||| | || | ||||| | ||||||||| | ||| ||||||||| |||| ||||||| |
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| T |
30653345 |
gatcaaacatattatatattaaaggagcattacataccttatcaaattggttgatgatatccttcaccttgacatgagctaaaggcacaaatatgggatt |
30653444 |
T |
|
| Q |
382 |
gtcgtatgcaagggacatgccatttgcaatccagggtgcaccaaa |
426 |
Q |
| |
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| ||||||||| |||| |||||||||| ||| || |||||||| |
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| T |
30653445 |
ataatatgcaaggaacattccatttgcaagccaaggcgcaccaaa |
30653489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 24662833 - 24663007
Alignment:
| Q |
63 |
agattgtggcaaagagagaactttgagacggattaagttgagacaagagct-aaaaatcattgcatccatgttataagtttt-ccttaatgccctctcaa |
160 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||| | |||| || | |||||||| | ||||||||||| ||||||| ||| |||||||| |||| |
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| T |
24662833 |
agattgtggcaaaaagagcactttgagacggattaagttaatacaaaaggttaaaaatcactacatccatgtta-aagttttgcctcaatgccctatcaa |
24662931 |
T |
|
| Q |
161 |
tcttatcctataaattaacctctagccaaagatgcacatcaccaggacactctaagagaatatgaatattatcttcaa |
238 |
Q |
| |
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|||| ||| |||||||||||||| |||||| || || | ||| ||||| || || |||||||||||| ||||||||| |
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| T |
24662932 |
tcttgtcccataaattaacctctcgccaaatattcatagcac--ggacaatccaaaagaatatgaatactatcttcaa |
24663007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 8079861 - 8079925
Alignment:
| Q |
11 |
tcagtcttttgttgccataacttaaggttcattcgttttcaaatactctacaagattgtggcaaa |
75 |
Q |
| |
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|||||||| |||||||||||| | |||||||||| ||| ||||| ||| |||| ||||||||||| |
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| T |
8079861 |
tcagtcttctgttgccataacattaggttcattcttttccaaatgctccacaaaattgtggcaaa |
8079925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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