View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14226_low_9 (Length: 389)
Name: NF14226_low_9
Description: NF14226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14226_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 37218060 - 37217707
Alignment:
| Q |
13 |
attgttttagacggtagtatatgttcttcagtcaagaactattggagaaactttattaattcttcatatagttgaggagaaaagaaaattatattgaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37218060 |
attgttttagacggtagtatatgttcttcagtcaagaactattggagaaactttattaattcttcatatagttgaggagaaaagaaaattatattgaatt |
37217961 |
T |
|
| Q |
113 |
gaatcaaaaggaccacactcattcctctacgactcgaaaatctattatacttggtttgttaaatcttaaataattaacttcattagaaggtaaatcaaat |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37217960 |
gaattaaaaggaccacactcattcctctacgactcgaaaatctattatgcttggtttgttaaatcttaaataattaacttcattagaaggtaaatcaaat |
37217861 |
T |
|
| Q |
213 |
tatacaagtat--atacaattgattgtttcttttgaccaaagtaaaatacttgaatattgttaaaatgtttgatga-tttcttttttcttcaaatagact |
309 |
Q |
| |
|
||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37217860 |
tatacaagtatacacacaattgagtgtttctattgaccaaagtaaaatacttgaatattgttaaaatgtttgatgattttcttttttcttcaaatagacc |
37217761 |
T |
|
| Q |
310 |
agcgactaaaaattaaccatttaaataaataagtgaagaattcaagatttgaac |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
37217760 |
agcgactaaaaattaaccatttaaataaataaatgaagaatttaagatttgaac |
37217707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University