View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_high_1 (Length: 640)
Name: NF14227_high_1
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 222 - 626
Target Start/End: Original strand, 2614756 - 2615160
Alignment:
| Q |
222 |
ataaccctatgacttgttctgcgttgagctgaaaggaatcttgtaaattattcaaaattagctgtcatgctccctaacctccaccactgagacagaattg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614756 |
ataaccctatgacttgttctgcgttgagctgaaaggaatcttgtaaattattcaaaattagctgtcatgctccctaacctccaccactgagacagaattg |
2614855 |
T |
|
| Q |
322 |
tcacaccttctttctaatatcaatttctaataatttcattcagggttctatataaactctttgtccttcaccattttcataacaacacacactaccttac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614856 |
tcacaccttctttctaatatcaatttctaataatttcattcagggttctatataaactctttgtccttcaccattttcataacaacacacactaccttac |
2614955 |
T |
|
| Q |
422 |
ctacattcaacatatatcagtttatttctgttgttaaaagataataatgaacactagaatgggtcgtgttgcatctgctgaagttgtcaacaacaggaac |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614956 |
ctacattcaacatatatcagtttatttctgttgttaaaagataataatgaacactagaatgggtcgtgttgcatctgctgaagttgtcaacaacaggaac |
2615055 |
T |
|
| Q |
522 |
aggtttagaggcaaaaagtctcttccaaaaagaggacaaataaaatcaaagatagcagcaagtgcttttcattccattgtctcagtaatttcaagggctt |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2615056 |
aggtttagaggcaaaaagtctcttccaaaaagaggacaaataaaatcaaagatagcagcaagtgcttttcattccattgtctcagtaatttcaagggctt |
2615155 |
T |
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| Q |
622 |
caact |
626 |
Q |
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| T |
2615156 |
caact |
2615160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 2614339 - 2614553
Alignment:
| Q |
11 |
catcatcatctgtacataaacaataaacttttgcttcctgaatcccacctaaatagcatgccaaacattaacaaaataaatctccttttatgactaaacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2614339 |
catcatcatctgtacataaacaataaacttttgcttcctgaatcccacctaattagcatgccaaacattaacaaaataaatctccttttatgactaaacc |
2614438 |
T |
|
| Q |
111 |
ccgttaccagatacaagacaggacagcttttagataccacattgacccgcacgtgttcatcattaacactagtagaggctgaaagcaacactattgtatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2614439 |
ccgttaccagatacaagacaggacagcttttagataccacattgacccgcacgtgttcatcattaacactagtaaaggctgaaagcaacactattgtatc |
2614538 |
T |
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| Q |
211 |
tttgaagctatataa |
225 |
Q |
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||||||||||||||| |
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| T |
2614539 |
tttgaagctatataa |
2614553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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