View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_high_11 (Length: 347)
Name: NF14227_high_11
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 43202822 - 43202515
Alignment:
| Q |
18 |
gttattgatttaggagtgggactggatttttaaatttcccttctatttcttaaattgaccgtgtgtttgataattggtgtttgttgaagaataacgtggc |
117 |
Q |
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| T |
43202822 |
gttattgatttaggagtgggactggatttttaaatttcccttctatttcttaaattgaccgtgtgtttgataattggtgtttgttgaagaataacgtggc |
43202723 |
T |
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| Q |
118 |
acatgagctctaggaaaatcaaaggaaatagatgcaggaaggaggatcctttaatgtgagatgtatctatttccttcttcattctctctctcagcatgac |
217 |
Q |
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| T |
43202722 |
acatgagatgtaggaaaatcaaaggaaatagatgcaggaaggaggatcctttaatgtgagatgtatccatttccttcttcattctctctctcagcatgac |
43202623 |
T |
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| Q |
218 |
cca-nnnnnnnggaataacgtggcacatgagcttgctgaattagtggtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattga |
316 |
Q |
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| T |
43202622 |
ccattttttttggaataccgtggcacatgagcttgctgaattagtggtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattga |
43202523 |
T |
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| Q |
317 |
tagaaatc |
324 |
Q |
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|||||||| |
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| T |
43202522 |
tagaaatc |
43202515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 31845424 - 31845485
Alignment:
| Q |
263 |
gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatc |
324 |
Q |
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| T |
31845424 |
gtgtgtttgatgatggagatgagttttaattgaattagtggtgtttggaattgatagaaatc |
31845485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 43441838 - 43441777
Alignment:
| Q |
263 |
gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatc |
324 |
Q |
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| T |
43441838 |
gtgtgtttgataatggagatgagttttaattgaattagtggtgtttggaattgatagaaatc |
43441777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 48528060 - 48527994
Alignment:
| Q |
25 |
atttaggagtgggactggatttttaaatttcccttctatttcttaaattgaccgtgtgtttgataat |
91 |
Q |
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| T |
48528060 |
atttgggagtgggactgaattttgaaatttcccttcttttccttaaactgaccgtgtgtttgataat |
48527994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 48528007 - 48527946
Alignment:
| Q |
263 |
gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatc |
324 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
48528007 |
gtgtgtttgataatggtgatgagttttaattgaattagtggggttaggaattgatagaaatc |
48527946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 26630280 - 26630219
Alignment:
| Q |
263 |
gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatc |
324 |
Q |
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|||| |||||| |||| |||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
26630280 |
gtgtgtttgatgatggagatgagttttaattgaattagtggtgtttggaattgatagaaatc |
26630219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 36845882 - 36845826
Alignment:
| Q |
268 |
tttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatc |
324 |
Q |
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||||||||||| |||||||||||||||||||| || ||| || |||||||||||||| |
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| T |
36845882 |
tttgataatggagatgagttttaattgaattagtgatgtttgtaattgatagaaatc |
36845826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 1103146 - 1103080
Alignment:
| Q |
25 |
atttaggagtgggactggatttttaaatttcccttctatttcttaaattgaccgtgtgtttgataat |
91 |
Q |
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| T |
1103146 |
atttgggagtgggactgaattttgaaatttcccttcttttccttaaagtggccgtgtgtttgataat |
1103080 |
T |
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