View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_high_14 (Length: 246)
Name: NF14227_high_14
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26663866 - 26663769
Alignment:
| Q |
1 |
ttacaagatcaagcatcatgatgatggttctattgagtgatttaaagctacatcggttgcaaagggttataatcattaattgatttattgtaaatgtt |
98 |
Q |
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| T |
26663866 |
ttacaagatcaagcatcatgatgatggttctattgagtgatttaaagctacattggttgcaaagggttataatcattaattgatttatggtaaatgtt |
26663769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26935461 - 26935364
Alignment:
| Q |
1 |
ttacaagatcaagcatcatgatgatggttctattgagtgatttaaagctacatcggttgcaaagggttataatcattaattgatttattgtaaatgtt |
98 |
Q |
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| T |
26935461 |
ttacaagatcaagcatcatgatgatggttctattgagtgatttaaagctacattggttgcaaagggttataatcattaattgatttatggtaaatgtt |
26935364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 7318046 - 7317917
Alignment:
| Q |
99 |
gagttcggatctgctccattacttgattcttcccgtttcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaaga |
198 |
Q |
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| T |
7318046 |
gagttcggatctgctccattacttcattcttcaagtttccccgtcccttgcttagatatgtgacacgtggcatggaaat-----atggttgaaattaaga |
7317952 |
T |
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| Q |
199 |
aagaaaattcaacctttcattgttccccttcttct |
233 |
Q |
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| T |
7317951 |
aagaaatttcaacctttcattgtcccccttcttct |
7317917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 34153010 - 34153119
Alignment:
| Q |
99 |
gagttcggatctgctccattacttgattcttcccgtttcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaaga |
198 |
Q |
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|||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34153010 |
gagttcagatctgctccattatttgattcttccagtttcccagtcccttgcttagatatgtgacacgtggcatggaaataatcaatggttgaaattaaga |
34153109 |
T |
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| Q |
199 |
aagaaaattc |
208 |
Q |
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|||||||||| |
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| T |
34153110 |
aagaaaattc |
34153119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 34153120 - 34153219
Alignment:
| Q |
136 |
tcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaagaaagaaaattcaacctttca-ttgttccccttcttctc |
234 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
34153120 |
tcccagtcccttgcttagatatgtgacacgtggcatggaaataatcaatagttgaaattaagaaagaaaattcaacctttcatttgttcccattcttctc |
34153219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 17037212 - 17037321
Alignment:
| Q |
98 |
tgagttcggatctgctccattacttgattcttcccgtttcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaag |
197 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17037212 |
tgagttcggatctgctccattatttgattcttccagtttcc-agtcccttgcttagatatgtgacacgtggcatggaaataatcaatggttgaaattaag |
17037310 |
T |
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| Q |
198 |
aaagaaaattc |
208 |
Q |
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||||||||||| |
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| T |
17037311 |
aaagaaaattc |
17037321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 17037322 - 17037421
Alignment:
| Q |
136 |
tcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaagaaagaaaattcaacctttca-ttgttccccttcttctc |
234 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
17037322 |
tcccagtcccttgcttagatatgtgacacgtggcatggaaataatcaatggttgaaattaagaaagaaaattcaacctttcatttgttcccattcttctc |
17037421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 17038018 - 17037945
Alignment:
| Q |
133 |
gtttcccaatcccttgcttagatatgtgacatgtggcatggaaataatcaatggttgaaattaagaaagaaaat |
206 |
Q |
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||||||||||||||||||||||| | ||||| |||||| | | ||||||||||||| ||||| ||| ||||| |
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| T |
17038018 |
gtttcccaatcccttgcttagatgtatgacaagtggcacatacaaaatcaatggttgagattaaaaaataaaat |
17037945 |
T |
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