View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_high_7 (Length: 371)
Name: NF14227_high_7
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 13986581 - 13986243
Alignment:
| Q |
18 |
cactgtgacattgagaatgaaggaaattattacgtacattaataagaatgtatggtgttacatggtgatatcattacatcaa-tatgttaaactttgggc |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
13986581 |
cactgtgagattgagaatgaaggaaattattacgtacattaataagaatgtatggtgttacatggtgatatcattacatcaaatatgttaaacttggggc |
13986482 |
T |
|
| Q |
117 |
aatagcaataaatgatacagatgaaaactgaaaaaactactaattagtgagaactaggaatctaatgaatacacaaacttaactaaggggtaagacattc |
216 |
Q |
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| T |
13986481 |
aatagcaataa-tgatacagatgaaaactgaaaaaactactaattagtgagaactaggaatctaatgaatacacaaacttaactaaggggtaagacattc |
13986383 |
T |
|
| Q |
217 |
agcaaatgtcttgaattaaatcattccaggctgagaggaataagctgctgctaatgtcagtgtcaccctgctgaatgtacgttaactggctcgattaatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13986382 |
agcaaatgtcttgaattaaatcattccaggctgagaggaataagctgctgcaaatgtcagtgtcaccctgctgaatgtacgttaactggctcgattaatg |
13986283 |
T |
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| Q |
317 |
gagatctacgccgtcttttggattgaggagagaacttcat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13986282 |
gagatctacgccgtcttttggattgaggagagaacttcat |
13986243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 13992479 - 13992141
Alignment:
| Q |
18 |
cactgtgacattgagaatgaaggaaattattacgtacattaataagaatgtatggtgttacatggtgatatcattacatcaa-tatgttaaactttgggc |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
13992479 |
cactgtgagattgagaatgaaggaaattattacgtacattaataagaatgtatggtgttacatggtgatatcattacatcaaatatgttaaacttggggc |
13992380 |
T |
|
| Q |
117 |
aatagcaataaatgatacagatgaaaactgaaaaaactactaattagtgagaactaggaatctaatgaatacacaaacttaactaaggggtaagacattc |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13992379 |
aatagcaataa-tgatacagatgaaaactgaaaaaactactaattagtgagaactaggaatctaatgaatacacaaacttaactaaggggtaagacattc |
13992281 |
T |
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| Q |
217 |
agcaaatgtcttgaattaaatcattccaggctgagaggaataagctgctgctaatgtcagtgtcaccctgctgaatgtacgttaactggctcgattaatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13992280 |
agcaaatgtcttgaattaaatcattccaggctgagaggaataagctgctgcaaatgtcagtgtcaccctgctgaatgtacgttaactggctcgattaatg |
13992181 |
T |
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| Q |
317 |
gagatctacgccgtcttttggattgaggagagaacttcat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13992180 |
gagatctacgccgtcttttggattgaggagagaacttcat |
13992141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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