View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14227_low_11 (Length: 370)
Name: NF14227_low_11
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_11 |
 | |
|
| [»] scaffold0067 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 27455777 - 27456114
Alignment:
| Q |
13 |
agagatgaacatattttccacatcaaattatgccaccaaaatcttcatatattactctgccannnnnnnagcaaaattttagattggtactacaaatttc |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27455777 |
agagatgaacatattttccacagcaaattatgccaccaaaatcttcatat--tactctgccatttttttagcaaaattttagattggtactacaaatttc |
27455874 |
T |
|
| Q |
113 |
acgaatttttaaagtgcggttacaactttgctgctaccatcgtaacttttctcactgttgtccagacttgttacgctatcatcgcctatcactttccgag |
212 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
27455875 |
acgaatttttaaagcgtggttacaactttgctgctaccatcgtaacttttctcactgttgtccagacttgttatgcaatcatcgcctatcactttccgag |
27455974 |
T |
|
| Q |
213 |
gtaagccaaatataaaactataatttcatatgcatatgtgtgagtacttttggatgacaaatttatannnnnnnaaaaggtaaaagagtcaacatcaagc |
312 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| | || | |
|
|
| T |
27455975 |
gtaagccatatataaaactatgatttcatatgcatatgtgtgagtactttttgatgacaaatttatattttttgaaaagataaaagagtca--aacaccc |
27456072 |
T |
|
| Q |
313 |
gcgttgtgatgaattgaagaagcaacgaaagatccaaattag |
354 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
27456073 |
gtgttgtgatgaaatgaagaggcaacgaaagatccaaattag |
27456114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 27425825 - 27426157
Alignment:
| Q |
18 |
tgaacatattttccacatcaaattatgccaccaaaatcttcatatattactctgccannnnnnnagcaaaattttagattggtactacaaatttcacgaa |
117 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27425825 |
tgaacatattttccccagaaaattatgccaccaaaatcttcatat--tactctgccatttttttagcaaaattttagattggtactacaaatttcacgaa |
27425922 |
T |
|
| Q |
118 |
tttttaaagtgcggttacaactttgctgctaccatcgtaacttttctcactgttgtccagacttgttacgctatcatcgcctatcactttccgaggtaag |
217 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27425923 |
tttttaaagcgcggctacatctttgctgctaccatcgtaacttttctcactgttgtccagacttgttacgcaatcatcgcctatcgctttccgaggtaag |
27426022 |
T |
|
| Q |
218 |
ccaaatataaaactataatttcatatgcatatgtgtgagtacttttggatgacaaatttatannnnnnnaaaaggtaaaagagtcaacatcaagcgcgtt |
317 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || || ||| |
|
|
| T |
27426023 |
ccatatataaaactatgatttcatatgcatatgtgtgagtacttttggatgacaaatttatattttttgaaaaggtaaaattgtca--aacacccgtgtt |
27426120 |
T |
|
| Q |
318 |
gtgatgaattgaagaagcaacgaaagatccaaattag |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27426121 |
gtgatgaattgaagaagcaacgaaagatccaaattag |
27426157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 18075613 - 18075728
Alignment:
| Q |
235 |
atttcatatgcatatgtgtgagtacttttggatgacaaatttatannnnnnnaaaaggtaaaagagtcaacatcaagcgcgttgtgatgaattgaagaag |
334 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||| | || || ||||||||||| |||||||| |
|
|
| T |
18075613 |
atttcatatgcatatgtttgactactgttggatgacaaatttatatattttgaaaaggtaaaagagtca--aacacccgtgttgtgatgaaatgaagaag |
18075710 |
T |
|
| Q |
335 |
caacgaaagatccaaatt |
352 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18075711 |
taacgaaagatccaaatt |
18075728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 2440 - 2314
Alignment:
| Q |
83 |
gcaaaattttagattggtactacaaatttcacgaatttttaaagtgcggttacaactttgctgctaccatcgtaacttttctcactgttgtccagacttg |
182 |
Q |
| |
|
||||||| |||||||||| |||||| || || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
2440 |
gcaaaatcttagattggttctacaatgtttacaaatttttaaagcgcggttacaactttgcttttaccctcgtaacttttctcactgtcgtccagacttg |
2341 |
T |
|
| Q |
183 |
ttacgctatcatcgcctatcactttcc |
209 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
2340 |
ttacacaatcatcgcctatcactttcc |
2314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 2290 - 2251
Alignment:
| Q |
315 |
gttgtgatgaattgaagaagcaacgaaagatccaaattag |
354 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
2290 |
gttgtgatgaaatgaagaagcaacaaaagatccaaattag |
2251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University