View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_12 (Length: 362)
Name: NF14227_low_12
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_12 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 28283634 - 28283969
Alignment:
| Q |
17 |
gaaataggtggatgaattgcaagactactctaagaagtattgagtgtattgagtgtcaccgtacccatatgcatagagaaggaaatgttgttgtagacgc |
116 |
Q |
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| T |
28283634 |
gaaataggtggatgaattgcaagactactctaagaagtattgagtgg-----gtg-----gtacccatatacatagagaaggaaatgttgttgtagatgc |
28283723 |
T |
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| Q |
117 |
tttagctaataatggccaaagcttaatgatattagctaataatgctgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcacca |
216 |
Q |
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| T |
28283724 |
tttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcacca |
28283823 |
T |
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| Q |
217 |
ctcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcg |
316 |
Q |
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| T |
28283824 |
ctcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcg |
28283923 |
T |
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| Q |
317 |
taatgaaaggtttaacctctgctgcacttagttgttttccgacagt |
362 |
Q |
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| T |
28283924 |
taatgaaaggtttaacctctgctgcacttagttgttttccgacagt |
28283969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 209 - 350
Target Start/End: Original strand, 31113912 - 31114057
Alignment:
| Q |
209 |
attcaccactcactaaaatgcggggtgcacgacaaaactcttcaagccacat----taattagacttttggaggaggaaggagccatttagatccttgaa |
304 |
Q |
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| T |
31113912 |
attcaccactcactaaaatgtggggtgcaaggcaaaactcttgaagccacatacattaattagacttttggaggaggaaggagccattttgatccttgaa |
31114011 |
T |
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| Q |
305 |
tcattccaagcgtaatgaaaggtttaacctctgctgcacttagttg |
350 |
Q |
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| T |
31114012 |
tcattccaagtgtaatgaaaggtttaacctctgcttcacttagttg |
31114057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 174488 - 174395
Alignment:
| Q |
257 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttg |
350 |
Q |
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| T |
174488 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttg |
174395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 180001 - 179908
Alignment:
| Q |
257 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttg |
350 |
Q |
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| T |
180001 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttg |
179908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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