View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_13 (Length: 350)
Name: NF14227_low_13
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 2613859 - 2614042
Alignment:
| Q |
11 |
tacataatactatgctgttgtgtaaggagggttaattacatgcggaaacaccggtgagatgttatgatacagcttaagagacaagacacgtccatgcctt |
110 |
Q |
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| T |
2613859 |
tacacaatactatgccgttgtgtaaggagggttaattacatgcggaaacaccggtgagatgttatgatacagcttaagagacaacacacgtccatgcctt |
2613958 |
T |
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| Q |
111 |
gccaaacaggaggcagtaccgaatcttcctctca--atatatataattgagtcaagaaatcacaacctagacaaacattcatca |
192 |
Q |
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| T |
2613959 |
gccaaacaggaggcagtactgaatctttctctcaatatatatataattgagtcaagaaatcacaacctagacaaacattcatca |
2614042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 217 - 350
Target Start/End: Original strand, 2614085 - 2614222
Alignment:
| Q |
217 |
acaatttaaaattgtatataatgtgatagaagtggtag----atatttggggtcctttgatcatttgattctgagttcaacccttggtcggtgtgtatga |
312 |
Q |
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| T |
2614085 |
acaatttaaaattgtatataatgtgatagaagtggtaggtagatacttggggtcctttgatcatttgattttgaattcaacccttggacggtgtgtatga |
2614184 |
T |
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| Q |
313 |
aaaacatttgatgagagagatcaacctcttaaatgaat |
350 |
Q |
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| T |
2614185 |
aaaacatttgatgagagaggtcaacctcttaaatgaat |
2614222 |
T |
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