View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_15 (Length: 324)
Name: NF14227_low_15
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 38982288 - 38982585
Alignment:
| Q |
6 |
gtccaagaatatgggaggaggtgattacgagttaaagtcatg-tatgtacatgtgatatagagcatctttattacaaattataaaacaaatgattttgac |
104 |
Q |
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||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38982288 |
gtccaagaaaaggggaggaggtgattacgagttaaagtcatggtatgtacatgtgatatagagcatctttattacaaattataaaacaaatgattttgac |
38982387 |
T |
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| Q |
105 |
attaaatagagataaattctaagacatcgatgcagacatactcgggagggagggtatggttctctctcctctccctaaccgtttttctccggtgaattta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38982388 |
attaaatagagataaattctaagacatcgatgcagagaaactcggga----gggtatggttctctctcctctccctaaccgtttttctccggtgaattta |
38982483 |
T |
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| Q |
205 |
tctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgtttcacatgcgtttcttgcctccatcatctgcatcgctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38982484 |
tctaccttcggtgcagctccggtggccgttttttcaccgttttattcgattatcttcgtcgtttcacatgcgtttcttgcctccatcatctgcatcgctt |
38982583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 38985437 - 38985331
Alignment:
| Q |
7 |
tccaagaatatgggaggaggtgattacgagttaaagtcatgtatgtacatgtgatatagagcatctttattacaaatt-ataaaacaaatgattttgaca |
105 |
Q |
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|||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||| |
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| T |
38985437 |
tccaagaaaaggggaggaggtgaatacgagttaaagtcatgtatgtacatgtgatatagagcatgtttactacaaattaataaaacaaatgattttcaca |
38985338 |
T |
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| Q |
106 |
ttaaata |
112 |
Q |
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||||||| |
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| T |
38985337 |
ttaaata |
38985331 |
T |
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