View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_18 (Length: 236)
Name: NF14227_low_18
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 30099695 - 30099896
Alignment:
| Q |
18 |
aggggagcaagaggaggtcctcaaagtgctgtaattctctcacaatgacataaaattctgcaacgcaactttaaaactatagcacaaaaagaaacacaat |
117 |
Q |
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| T |
30099695 |
aggggagcaagaggaggtcctcaaagtgttgtaattctctcacaatgacataaaattctgcaacgcaactttaaaactatagcacaaaaagaaacacaat |
30099794 |
T |
|
| Q |
118 |
tcaaacatgcaccaattgacttatataccatggagaagagttggtacgttatttttggtgtgaagcaaatctcatttgtgcacaaatgtagacactaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099795 |
tcaaacatgcaccaattgacttatataccatggagaagagttggtacattatttttggtgtgaagcaaatctcatttgtgcacaaatgtagacactaatc |
30099894 |
T |
|
| Q |
218 |
ct |
219 |
Q |
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|| |
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| T |
30099895 |
ct |
30099896 |
T |
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