View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_19 (Length: 235)
Name: NF14227_low_19
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34970024 - 34969809
Alignment:
| Q |
1 |
tcattatgtgtggttttaaaaatatgttatgattgaagtcaagcattttaaattatttgataaatatgattgattaacggtataaaaaatctttccattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34970024 |
tcattatgtgtggttttaaaaatatgttatgattgaagtcaaacattttaaattatttgataaatatgattgattgacggtataaaaaatctttccattg |
34969925 |
T |
|
| Q |
101 |
accatgtatatattaaatcattgcaatttcagtttccttctccttattcttcctattcttttacctataggctgaaatagaacggtactcannnnnnnnc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
34969924 |
accatgtatatattaaatcattgcaatttcagtttccttctccttattcttcctattcttttacctataggctgaaatagagaggtactcattttttttc |
34969825 |
T |
|
| Q |
201 |
caactaacaagttgcc |
216 |
Q |
| |
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|||||||||||||||| |
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|
| T |
34969824 |
caactaacaagttgcc |
34969809 |
T |
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