View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_2 (Length: 606)
Name: NF14227_low_2
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 578
Target Start/End: Complemental strand, 7674249 - 7673690
Alignment:
| Q |
16 |
caagaaaaacatgaagtgtgcgtcaaaatcatccttaagaatctatggatgatgagccataatacatgtatggctttgatgtaccaccttgtattaacga |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7674249 |
caagaaaaacatgaagtgtgtgtcaaaatcatccttaagaatctatggatgatgagccataatacatgtatggctgtgatgtaccaccttgtattaacga |
7674150 |
T |
|
| Q |
116 |
tttatcatgtaatgaaatgagacgaatgtttttctctnnnnnnncaaaaggacataccgaacttgacaattcaagagactaaattgagtattttattcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7674149 |
tttatcatgtaatgaaatgagacgaatgttttcccc-aaaaaaacaaaaggacataccgaacttgacaattcaagagactaaattgagtattttattcaa |
7674051 |
T |
|
| Q |
216 |
aatattgttgttttgtttttgggtcatgacaagttttcactaaacttgacttacatgttggcactaacgtcatgtttgcacgatatcatggtgtttaaat |
315 |
Q |
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| T |
7674050 |
aatattgttgttttgtttttgggtcatgacaagttttcactaaacttgacttacatcttggcactaacgtcatgtttgcacgatatcatggtgtttaaat |
7673951 |
T |
|
| Q |
316 |
gcggtggtctaagtcttaaatgagtaacgtacagtgtaagtgtaactaggacaaatcatttccaaacacacaaaataatgattagctcaccataatttgt |
415 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7673950 |
gcggtggtctaagtcttgaatgagtagcatacagtgtaagtgtaactaggacaaatcatttccaaa--cacaaaataatgattagctcaccataatttgt |
7673853 |
T |
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| Q |
416 |
ccactttatatcatagcattcttatcctaatgaattgaaacaaaaatgttgtgtgaattgataaaataatggaaactggattaattgcggtcactcacgg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
7673852 |
ccactttatatcatagcattcttatcctaatgaattgaaacaaaaaagttgtgtgaattgataaaataatggaaattggattagttgcggtcactcacgg |
7673753 |
T |
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| Q |
516 |
acatcacacattcacgcagttagttacagctgattgtgtagatttgattatagttaatgaata |
578 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7673752 |
acatcacacattcatgcagttagttacagctgattgtgtagatttgattatagttaatgaata |
7673690 |
T |
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