View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_21 (Length: 210)
Name: NF14227_low_21
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 30099718 - 30099516
Alignment:
| Q |
1 |
ttgaggacctcctcttgctcccctctgtttattatcatattgtttattttttctttgttgttgttgtggttacctgcaccaacctacctgaacaatctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099718 |
ttgaggacctcctcttgctcccctctgtttattatcatattgtttattttttctttgttgttgttgtggttacctgcaccaacctacctgaacaatctgt |
30099619 |
T |
|
| Q |
101 |
cctttccactgtctggtacatgacc----ccttggttaaaacgtatgcagatgcgtttcattaatcatatccgaagtcgactattgctcatccacacagg |
196 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30099618 |
cctttccactgtctggtacatgacccctaccttggttaaaacgtatgcagatgcatttcattaatcatatccgaagtcgactattgctcatccatacagg |
30099519 |
T |
|
| Q |
197 |
ttc |
199 |
Q |
| |
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||| |
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|
| T |
30099518 |
ttc |
30099516 |
T |
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