View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_4 (Length: 528)
Name: NF14227_low_4
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 38486717 - 38486215
Alignment:
| Q |
14 |
caaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486717 |
caaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatg |
38486618 |
T |
|
| Q |
114 |
cattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
38486617 |
cattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacct |
38486518 |
T |
|
| Q |
214 |
gtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaa |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486517 |
gtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaa |
38486418 |
T |
|
| Q |
314 |
agtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486417 |
agtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaa |
38486318 |
T |
|
| Q |
414 |
gggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486317 |
gggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttctcattctcatccctc |
38486218 |
T |
|
| Q |
514 |
cct |
516 |
Q |
| |
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||| |
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| T |
38486217 |
cct |
38486215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 426
Target Start/End: Complemental strand, 3685886 - 3685536
Alignment:
| Q |
76 |
aaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcct |
175 |
Q |
| |
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|||||||| |||||||||||||| ||||| || || ||||| || | ||||||||||||||||| || | ||| || | || |||||||||| || | |
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| T |
3685886 |
aaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttcaaagggtttgccagaaatcgctggcccagtgtcacaaaacttgtctctt |
3685787 |
T |
|
| Q |
176 |
gagctgacatgaaccaagcaagagaggaaacgaaacctgtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaa |
275 |
Q |
| |
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| | |||||||||||||||||| || ||||| | ||||| ||||||| || | || |||||||| ||||| || ||||||| ||| ||||| |
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| T |
3685786 |
gggatgacatgaaccaagcaagcgacgaaacagagcctgtgaatatattctcacgaacccccaaaatggttggcttcttgataccatggtagacattgaa |
3685687 |
T |
|
| Q |
276 |
ttcttccaagagatttcgtactttaagtgcctcctcaaagtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcg |
375 |
Q |
| |
|
|| ||||| ||||| || | ||| || || |||||||| || ||||| || |||||||| || || ||||||||||| || || || || || || || |
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| T |
3685686 |
ctcctccaacagattccgcattttgagagcttcctcaaaataattgtcttgattcatatctatggtctgaattgcatcaccccgcgtaaagatcattgca |
3685587 |
T |
|
| Q |
376 |
tggttttgattttccggctttccttctccaagtttcaagggacctggcaat |
426 |
Q |
| |
|
|| || ||||||||||| || |||||||||||||| || ||||| |||||| |
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|
| T |
3685586 |
tgattctgattttccggtttcccttctccaagttttaaaggaccaggcaat |
3685536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 30295459 - 30295375
Alignment:
| Q |
323 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
407 |
Q |
| |
|
|||||||||||||||| ||||| | || || || |||||| |||| || || | |||||||||||| ||||| ||||||||||| |
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| T |
30295459 |
cctggttcatatcaattgtttggagggcttcgccacgagtgtatattattgcattgttttgattttcaggcttcccttctccaag |
30295375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 14 - 498
Target Start/End: Complemental strand, 30121116 - 30120632
Alignment:
| Q |
14 |
caaaaatgtcctcgcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatg |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
30121116 |
caaatatgtcctcgcttatgttgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatg |
30121017 |
T |
|
| Q |
114 |
cattcgaattttcaaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacatgaaccaagcaagagaggaaacgaaacct |
213 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||||| ||||||||||| ||| | || |
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|
| T |
30121016 |
cattcgaactttcaaaggatttgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagcca |
30120917 |
T |
|
| Q |
214 |
gtaaatatatgttccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaagtgcctcctcaa |
313 |
Q |
| |
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|| || || |||||||| || || ||||| |||||||| || | ||| |||||| | | | ||||| | |||||||| | || ||||| ||||||| |
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| T |
30120916 |
gtgaaaatgtgttccctgacacctaaaattgttggtttccggacaccgtagtaacgtctatactcttcaaggagatttctcatcttgagtgcttcctcaa |
30120817 |
T |
|
| Q |
314 |
agtagttgtcctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaagtttcaa |
413 |
Q |
| |
|
||||||| ||||| ||||| || ||||| || | || |||||||||||||| ||||||||||| |||||||| || |||||||| || || || ||||| |
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| T |
30120816 |
agtagttatcctgattcatgtctatagtctgcaaagcgtccccgcgagtgaagatgatggcgtgattttgattctcgggctttccctccccgagcttcaa |
30120717 |
T |
|
| Q |
414 |
gggacctggcaattttacacggtatatttccacctccctctccagctgttggtcatacttaacaagaacagaataatagtccttc |
498 |
Q |
| |
|
||||| |||| ||| || | ||||| ||| |||||| | |||| ||| || |||||||||||||| ||||| |||| |||||| |
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| T |
30120716 |
tggacccggcagtttgactctgtatacttcaacctccttttccaactgctgatcatacttaacaaggacagagaaatactccttc |
30120632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 34191701 - 34191617
Alignment:
| Q |
323 |
cctggttcatatcaatagtttgaattgcatccccgcgagtgaatatgatggcgtggttttgattttccggctttccttctccaag |
407 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || || |||||||| || || || ||||| || || ||||||||||| ||||| |
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| T |
34191701 |
cctgattcatatcaatagtttgaagtgcatcaccacgggtgaatattatcgcatgattttggttctcaggctttccttcaccaag |
34191617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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