View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14227_low_5 (Length: 473)

Name: NF14227_low_5
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14227_low_5
NF14227_low_5
[»] chr2 (16 HSPs)
chr2 (218-465)||(30026269-30026516)
chr2 (218-465)||(30228321-30228568)
chr2 (218-465)||(30034183-30034430)
chr2 (161-370)||(30098974-30099183)
chr2 (218-465)||(30115622-30115854)
chr2 (218-465)||(30130374-30130606)
chr2 (1-163)||(30099312-30099474)
chr2 (352-465)||(30060429-30060542)
chr2 (136-223)||(30026544-30026631)
chr2 (136-223)||(30034068-30034155)
chr2 (136-223)||(30093654-30093741)
chr2 (136-223)||(30115507-30115594)
chr2 (136-223)||(30130259-30130346)
chr2 (136-223)||(30228206-30228293)
chr2 (218-282)||(30093769-30093833)
chr2 (296-340)||(19076847-19076891)
[»] chr4 (1 HSPs)
chr4 (296-340)||(4060987-4061031)
[»] chr3 (1 HSPs)
chr3 (253-340)||(38889280-38889369)
[»] chr5 (1 HSPs)
chr5 (296-340)||(5245882-5245926)
[»] chr1 (2 HSPs)
chr1 (296-340)||(37214001-37214045)
chr1 (296-340)||(51051575-51051619)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 218 - 465
Target Start/End: Complemental strand, 30026516 - 30026269
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30026516 ttaatattactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 30026417  T
Q  318 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  30026416 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgtgtctgtgcgtgtctaaatatatatagtgtgctcaaa 30026317  T
Q  418 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtatattctt 465  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30026316 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtattttctt 30026269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 218 - 465
Target Start/End: Original strand, 30228321 - 30228568
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30228321 ttaatattactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 30228420  T
Q  318 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  30228421 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgtgtctgtgcgtgtctaaatatatatagtgtgctcaaa 30228520  T
Q  418 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtatattctt 465  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30228521 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtattttctt 30228568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 218 - 465
Target Start/End: Original strand, 30034183 - 30034430
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 317  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034183 ttaatatgactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 30034282  T
Q  318 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  30034283 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgtgtctgtgcgtgtctaaatatatatagtgtgctcaaa 30034382  T
Q  418 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtatattctt 465  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30034383 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtattttctt 30034430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 161 - 370
Target Start/End: Complemental strand, 30099183 - 30098974
Alignment:
Q  161 tataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaatattactccacttgagttgtgttttctgttaggaaaata 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30099183 tataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaatattactccacttgagttgtgttttctgttaggaaaata 30099084  T
Q  261 cttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaaactagaaagggaaaataattaaaagatatcaatttttcaacaa 360  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30099083 cttccttgatgacaaagatttggacactattagagcacacatacacaattgagaaaaactagaaagggaaaataattaaaagatatcaatttttcaacaa 30098984  T
Q  361 ttaaattaaa 370  Q
    ||||||||||    
T  30098983 ttaaattaaa 30098974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 218 - 465
Target Start/End: Original strand, 30115622 - 30115854
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 317  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||               |||||||||||||||||||     
T  30115622 ttaatataactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttg---------------cacatacacaattgagaaat 30115706  T
Q  318 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaa 417  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||    
T  30115707 actataaagggaaaataattaaaacatatcaatttttcaacaattaaattaaatttatttttgtgtctgtgcgtgtctagatatatatagtgtgcttaaa 30115806  T
Q  418 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtatattctt 465  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30115807 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtattttctt 30115854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 218 - 465
Target Start/End: Original strand, 30130374 - 30130606
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttggacactatttgagcacacatacacaattgagaaaa 317  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||               |||||||||||||||||||     
T  30130374 ttaatatgactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttg---------------cacatacacaattgagaaat 30130458  T
Q  318 actagaaagggaaaataattaaaagatatcaatttttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaa 417  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||    
T  30130459 actataaagggaaaataattaaaacatatcaatttttcaacaattaaattaaatttatttttgtgtctgtgcgtgtctagatatatatagtgtgcttaaa 30130558  T
Q  418 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtatattctt 465  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  30130559 tgcttgtaacaaaacaagacttcctcttgatcttaagtgtattttctt 30130606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30099474 - 30099312
Alignment:
Q  1 aatcttttatacctcacatattcttatatggggataaatcaccgatctaaacagtggtgagaacttcctacccatatggtaacccaataaaaaaagagga 100  Q
    |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  30099474 aatcttatgtacctcacatattcttatatggggataaatcacagatctaaacagtggtgagaacttcctacatatatggtaacccaataaaaaaagagga 30099375  T
Q  101 aatggannnnnnnnnnnnnnccggttacaaaagagataaatgaatgatatcagtagaaaatat 163  Q
    ||||||              |||||||||||||||||||||||||||||||||||||||||||    
T  30099374 aatggattttttttttttttccggttacaaaagagataaatgaatgatatcagtagaaaatat 30099312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 352 - 465
Target Start/End: Complemental strand, 30060542 - 30060429
Alignment:
Q  352 tttcaacaattaaattaaatttatttttgcatctgtgcgtgtctagatatatatagtgtgctcaaatgcttgtaacaaaacaagacttcctcttgatctt 451  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30060542 tttcaacaattaaataaaatttatttttgcgtctgtgcgtgtctagatatatatagtgtgctcaaatgcttgtaacaaaacaagaattcctcttgatctt 30060443  T
Q  452 aagtgtatattctt 465  Q
    |||| ||| |||||    
T  30060442 aagtttattttctt 30060429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 30026631 - 30026544
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30026631 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30026544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 30034068 - 30034155
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034068 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30034155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 30093654 - 30093741
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30093654 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30093741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 30115507 - 30115594
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30115507 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30115594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 30130259 - 30130346
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30130259 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30130346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 30228206 - 30228293
Alignment:
Q  136 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30228206 ataaatgaatgatatcagtagaaaatataaaatatatatcaatgaagtatgtttgtaactgacataaaggttactaggcaccttaata 30228293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 30093769 - 30093833
Alignment:
Q  218 ttaatattactccacttgagttgtgttttctgttaggaaaatacttccttgatgacaaagatttg 282  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30093769 ttaatatgactccacttgagttgtgttttcttttaggaaaatacttccttgatgacaaagatttg 30093833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 19076891 - 19076847
Alignment:
Q  296 cacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||    
T  19076891 cacatatacacaattgagaaaaggtagaaagagaaaataattaaa 19076847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 4061031 - 4060987
Alignment:
Q  296 cacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  4061031 cacacatacacaattgagaaaaggtagaaagggaaaataattaaa 4060987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 38889369 - 38889280
Alignment:
Q  253 ggaaaatacttccttgatgacaaagatttggacacta--tttgagcacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    ||||||||||| |||||  ||||  ||||||||||||  |||   |||||||||| |||||||||||  ||||||| |||||||||||||    
T  38889369 ggaaaatacttacttgaacacaagtatttggacactaaatttagacacacatacataattgagaaaaggtagaaagagaaaataattaaa 38889280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 5245882 - 5245926
Alignment:
Q  296 cacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    |||||||||||||||||| |||| || |||| |||||||||||||    
T  5245882 cacacatacacaattgaggaaaagtaaaaagagaaaataattaaa 5245926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 37214001 - 37214045
Alignment:
Q  296 cacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||    
T  37214001 cacacatacataattgagaaaaggtagaaagagaaaataattaaa 37214045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 51051619 - 51051575
Alignment:
Q  296 cacacatacacaattgagaaaaactagaaagggaaaataattaaa 340  Q
    |||||||||| |||||||||||  ||||||| |||||||||||||    
T  51051619 cacacatacataattgagaaaaggtagaaagagaaaataattaaa 51051575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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