View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_7 (Length: 422)
Name: NF14227_low_7
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 30992993 - 30992590
Alignment:
| Q |
1 |
cggtaggaatcgaaatcggtatcaataaccttcaagaagaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30992993 |
cggtaggaatcgaaatcggtatcaataaccttcaagaagaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagcctt |
30992894 |
T |
|
| Q |
101 |
accacacataatcctaagttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30992893 |
accacacataatcctaagttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttcacaagctcttccatatcttct |
30992794 |
T |
|
| Q |
201 |
tttgcgaaaaacacatcactctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30992793 |
tttgcgaaaaacacatcactctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcat |
30992694 |
T |
|
| Q |
301 |
aagcaagagggaatgtcaaaattggtacaccagaaaaaacagcttccaaagttgaattccatccacaatggctccaaaatccacctatagaagcatgaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30992693 |
aagcaagagggaatgtcaaaattggtacaccagaaaaaacagcttccaaagttgaattccatccacaatggctccaaaatccacctatagaagcatgaga |
30992594 |
T |
|
| Q |
401 |
caac |
404 |
Q |
| |
|
|||| |
|
|
| T |
30992593 |
caac |
30992590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 31003111 - 31002725
Alignment:
| Q |
18 |
ggtatcaataaccttcaagaagaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagccttaccacacataatcctaa |
117 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||| |||||| ||| ||| |
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|
| T |
31003111 |
ggtatcgataaccttcaagaaaaaatgtcactgataaatgcgtccaggttcctatctgaggatccgcctttaccaatagctttacgacacatgatcttaa |
31003012 |
T |
|
| Q |
118 |
gttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcgaaaaacacatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
31003011 |
gttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcaaaaaccacatc |
31002912 |
T |
|
| Q |
218 |
actctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcataagcaagagggaatgtc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31002911 |
actctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcataagcaagagggaatgtc |
31002812 |
T |
|
| Q |
318 |
aaaattggtacaccagaaaaaacagcttccaaagttgaattccatccacaatggctccaaaatccacctatagaagcatgagacaac |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
31002811 |
aaaattggtacaccagaaaaaacagtatccaaagttgaattccatccacaatgactccaaaatccacctatagaagaatgagacaac |
31002725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 30999948 - 30999561
Alignment:
| Q |
18 |
ggtatcaataac-cttcaagaagaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagccttaccacacataatccta |
116 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||| |||| ||| | || |
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|
| T |
30999948 |
ggtatcaataacgcgtcaagaagaaatgtcactgataaattcgttgaggttcctatctgaggatccacctttaccaatagctttacgacacgtaacctta |
30999849 |
T |
|
| Q |
117 |
agttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcgaaaaacacat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
30999848 |
agttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcaaaaaccacat |
30999749 |
T |
|
| Q |
217 |
cactctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcataagcaagagggaatgt |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
30999748 |
cactctccaacttcgatgatttttctaccttccacccatttttccattcatcaacaatttgagtgctattagggtgttgatcatgggcaagagggaatgt |
30999649 |
T |
|
| Q |
317 |
caaaattggtacaccagaaaaaacagcttccaaagttgaattccatccacaatggctccaaaatccacctatagaagcatgagacaac |
404 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
30999648 |
caaaattggtacaccagaaaaaacagcatccaaagttgaattccatccacaatgactccaaaatccacctatagaagaatgagacaac |
30999561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 30989344 - 30988958
Alignment:
| Q |
18 |
ggtatcaataaccttcaagaagaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagccttaccacacataatcctaa |
117 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || |||| | |||||| | | | |
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|
| T |
30989344 |
ggtatcagtgaccttcaagatgaaatgtcactgataaatgcgtcgaggttcctatctgaagatccgcctttaccaatcgctttacgaaacataaccttca |
30989245 |
T |
|
| Q |
118 |
gttctcttgctctatctctaattttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcgaaaaacacatc |
217 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||| | || |||||| |
|
|
| T |
30989244 |
gttctctcgctctatctctaattttcttcccctcttggttttcaagatccataaacctcttaaccaactcttctatatcttcttttgcaagaatcacatc |
30989145 |
T |
|
| Q |
218 |
actctccaacttcgatgatttctctaccttccacccatttttccattcatcaacaatttgagtgctattaggaaattgatcataagcaagagggaatgtc |
317 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||| |
|
|
| T |
30989144 |
actctccaactttgattgtatctctaccttccacccatttttccattcatcaacaatttgagtactattaggaacttgatccaagaaaagagggaatgtc |
30989045 |
T |
|
| Q |
318 |
aaaattggtacaccagaaaaaacagcttccaaagttgaattccatccacaatggctccaaaatccacctatagaagcatgagacaac |
404 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30989044 |
aaaattggtacaccagcaaaaacagtttccaaagttgaattccatccacaatggctccaaaatccacctatagaagaatgagacaac |
30988958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 39 - 240
Target Start/End: Complemental strand, 30994754 - 30994553
Alignment:
| Q |
39 |
gaaatgtcactgataaatgcgtcgaggttcctatctgaggatccacctttacaaatagccttaccacacataatcctaagttctcttgctctatctctaa |
138 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||| || |||| |||| || | | ||||| | ||||||||||||| |
|
|
| T |
30994754 |
gaaatgtcactgataaatgcgtcaaggttcctatctgaaaatccgcctttaccaatcgctttacagcacacaaccttcggttctttcgctctatctctaa |
30994655 |
T |
|
| Q |
139 |
ttttctttccctcttggctttcaagatccataaacctcttaacaagctcttccatatcttcttttgcgaaaaacacatcactctccaacttcgatgattt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
30994654 |
ttttctttccctcttggctttcaagattcataaacctcttaaccaattcttctatatcttcttttgcaaaaatcacatcactctccaactttgatgattt |
30994555 |
T |
|
| Q |
239 |
ct |
240 |
Q |
| |
|
|| |
|
|
| T |
30994554 |
ct |
30994553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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