View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14227_low_8 (Length: 400)
Name: NF14227_low_8
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14227_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 45976273 - 45975895
Alignment:
| Q |
16 |
cctgtgcatagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatattaattatctacacaca |
115 |
Q |
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| T |
45976273 |
cctgtgcatagttactaacgtccttgtgcgactaataaaatagaaaatttggtatgataattgatatgctactagcaggcatatcaattatctacacaca |
45976174 |
T |
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| Q |
116 |
ccacaaagctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccacc |
215 |
Q |
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| T |
45976173 |
ccacaaagctatctcagtaaattaacacaccaatacagtacaatacttaaaccttgaagagaatcgctcgatgcctacaaagaccagaagatagaccacc |
45976074 |
T |
|
| Q |
216 |
aatgggaagtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatatacccctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976073 |
aatgggaagtacaacacacttgtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatatacccctt |
45975974 |
T |
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| Q |
316 |
caataatatacacactcagaatagcaacaacataataaggaaaaaagt---gattatattgaagaatactactatatat |
391 |
Q |
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| T |
45975973 |
caataatatacacactcagaatagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatat |
45975895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 28052311 - 28052450
Alignment:
| Q |
166 |
accttgaagagaatcgctcgatgcctacaaagaccagaagatagaccaccaatgggaagtacaacacacttgtgaaaattcctcaacctcttactaacca |
265 |
Q |
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|||||||||||||| || ||||||||||| || || | || | | ||||| ||||| |||||||||| |||||||||||||||| ||||||||||| |
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| T |
28052311 |
accttgaagagaattgcgcgatgcctacagagtcccgtggacaaattaccaactggaagcacaacacactgatgaaaattcctcaaccgcttactaacca |
28052410 |
T |
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| Q |
266 |
acttccactgtttgtggagatctcctcgctccaccgggaa |
305 |
Q |
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| T |
28052411 |
tcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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