View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14227_low_9 (Length: 391)

Name: NF14227_low_9
Description: NF14227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14227_low_9
NF14227_low_9
[»] chr1 (1 HSPs)
chr1 (93-391)||(28720310-28720608)
[»] chr3 (3 HSPs)
chr3 (100-171)||(43693767-43693838)
chr3 (100-240)||(43684719-43684856)
chr3 (103-141)||(2467765-2467803)
[»] chr5 (4 HSPs)
chr5 (103-241)||(23940395-23940533)
chr5 (102-241)||(32429672-32429811)
chr5 (103-241)||(24005203-24005341)
chr5 (100-171)||(14308339-14308410)
[»] scaffold1089 (1 HSPs)
scaffold1089 (103-141)||(860-898)
[»] chr6 (2 HSPs)
chr6 (107-143)||(7806063-7806099)
chr6 (107-143)||(10416257-10416293)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 93 - 391
Target Start/End: Original strand, 28720310 - 28720608
Alignment:
Q  93 cttctagtccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccatnnnnnnnnccaataca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  28720310 cttctagtccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccataaaaaaaaccaataca 28720409  T
Q  193 ccatagttcaatatgaattaagttttgaaacaacggaatgcctttgaaaatctcatcaatattcatctgcaaagaagcctcttgtatcctaacagcacgt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28720410 ccatagttcaatatgaattaagttttgaaacaacggaatgcctttgaaaatctcatcaatattcatctgcaaagaagcctcttgtatcctaacaacacgt 28720509  T
Q  293 agaaattcaacattatgaattgcattaaacggaacatcgattgaaccaacgtcagctctaaccaatttagacaagaacaatgattcaaattcttctcct 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28720510 agaaattcaacattatgaattgcattaaacggaacatcgattgaaccaacgtcagctctaaccaatttagacaagaacaatgattcaaattcttctcct 28720608  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 43693767 - 43693838
Alignment:
Q  100 tccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatccca 171  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||    
T  43693767 tccacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatccca 43693838  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 43684719 - 43684856
Alignment:
Q  100 tccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccatnnnnnnnnccaatacaccatagt 199  Q
    ||||||||||||||| |||| || ||||| |||||||||||||||| ||| ||||||||||||||||||||| || |          ||   ||||||||    
T  43684719 tccacaaacctttctgatgataagaatttcaagcttgggacaattcagaagcaattctactacaccatcccagccgtaaaagtagtaaa---accatagt 43684815  T
Q  200 tcaatatgaattaagttttgaaacaacggaatgcctttgaa 240  Q
    ||||| |||||||| ||||||||||||||||||| ||||||    
T  43684816 tcaatgtgaattaaattttgaaacaacggaatgcttttgaa 43684856  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 2467765 - 2467803
Alignment:
Q  103 acaaacctttctaatgaaaacaatttgaagcttgggaca 141  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  2467765 acaaacctttctaataaaaacaatttgaagcttgcgaca 2467803  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 23940395 - 23940533
Alignment:
Q  103 acaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccatnnnnnnnnccaatacaccatagttca 202  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||  | ||| ||||| ||||||||||| ||||          | || |||||||| ||    
T  23940395 acaaaccttactaataaaaagaatttgaagcttgggacaattcttgagcaaatctaccacaccatcccagccatgaaagaagtgattaaaccatagtcca 23940494  T
Q  203 atatgaattaagttttgaaacaacggaatgcctttgaaa 241  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  23940495 atatgaattaagttttgaaacacaggaatgcctttgaaa 23940533  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 32429672 - 32429811
Alignment:
Q  102 cacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccatnnnnnnnnccaatacaccatagttc 201  Q
    ||||||||||||| ||||||| ||||||||||||||||||||   | | |||||||||||  ||||||||||||         | || | ||||||||||    
T  32429672 cacaaacctttcttatgaaaaaaatttgaagcttgggacaatgtcggagcaattctactatgccatcccaaccacgaaaaacactaaaaaaccatagttc 32429771  T
Q  202 aatatgaattaagttttgaaacaacggaatgcctttgaaa 241  Q
    ||||  ||||||||||||||||| ||||||| ||||||||    
T  32429772 aatacaaattaagttttgaaacaccggaatgtctttgaaa 32429811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 24005203 - 24005341
Alignment:
Q  103 acaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatcccaaccatnnnnnnnnccaatacaccatagttca 202  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||| | ||  ||||||||||||| ||| ||||         | | | ||||||||| |    
T  24005203 acaaacctttctaataaaaagaatttgaagcttgggacagttctggagcatatctactacaccattccagccatgaaagaactccaaaaaccatagttga 24005302  T
Q  203 atatgaattaagttttgaaacaacggaatgcctttgaaa 241  Q
    |||| |||||||||||||||||  ||||||| |||||||    
T  24005303 atattaattaagttttgaaacacaggaatgcttttgaaa 24005341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 14308410 - 14308339
Alignment:
Q  100 tccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatccca 171  Q
    ||||||||||||| | |||||||  |||| |||| ||||||||||||| | |||||||||||||||||||||    
T  14308410 tccacaaaccttttttatgaaaaggatttcaagcctgggacaattctggagcaattctactacaccatccca 14308339  T

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Target: scaffold1089 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 860 - 898
Alignment:
Q  103 acaaacctttctaatgaaaacaatttgaagcttgggaca 141  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  860 acaaacctttctaataaaaacaatttgaagcttgggaca 898  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 7806063 - 7806099
Alignment:
Q  107 acctttctaatgaaaacaatttgaagcttgggacaat 143  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  7806063 acctttttaatgaaaagaatttgaagcttgggacaat 7806099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 10416293 - 10416257
Alignment:
Q  107 acctttctaatgaaaacaatttgaagcttgggacaat 143  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  10416293 acctttttaatgaaaagaatttgaagcttgggacaat 10416257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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