View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14228_high_11 (Length: 247)
Name: NF14228_high_11
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 31062654 - 31062874
Alignment:
| Q |
18 |
acaagaagggtaaattttcttttttgaaggaaagaagggtgcatataatttcactnnnnnnnggttcatgtaattaataattacgtggcagttacgccta |
117 |
Q |
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| T |
31062654 |
acaagaagggtacattttcttttttgaaggaaagaagggtgcatataatttcactaaaaaaaggttcatgtaattaataattacgtggcagttacgccta |
31062753 |
T |
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| Q |
118 |
aacgaggaggtgctgtaaccgctgcttgcccatttccaccgacagtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgatt |
217 |
Q |
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| T |
31062754 |
aacgaggaggtgctgtaatcgctgcttgcccatttccaccaacagtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgatt |
31062853 |
T |
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| Q |
218 |
ttccaaaaacattccctttgc |
238 |
Q |
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| T |
31062854 |
ttccaaaaacattccctttgc |
31062874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 31050245 - 31050319
Alignment:
| Q |
161 |
agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattttccaaaaacattccctt |
235 |
Q |
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| T |
31050245 |
agtagacaaaacattagactcagcgagaagtgttttcccattaaattttggttgatttctcaaaatcattccctt |
31050319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 31107772 - 31107829
Alignment:
| Q |
161 |
agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt |
218 |
Q |
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| T |
31107772 |
agtagacaaaacatgaggctctgaaagaagtgtttttccattaatttcaggttgattt |
31107829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 31145373 - 31145430
Alignment:
| Q |
161 |
agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt |
218 |
Q |
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| T |
31145373 |
agtagacacaacatgaggctcagcaagaagtgtttttccatcaacttctggttgattt |
31145430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 31163197 - 31163254
Alignment:
| Q |
161 |
agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattt |
218 |
Q |
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| T |
31163197 |
agtagacacaacatgaggctcagcaagaagtgtttttccatcaacttctggttgattt |
31163254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 31914295 - 31914218
Alignment:
| Q |
161 |
agtagacaaaacatgaggctcagaaagaagtgtattcccactaacttttggttgattttccaaaaacattccctttgc |
238 |
Q |
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||||||||||||||||||||| ||||||||||| || ||| ||| | ||||||||| |||||| || ||||||||| |
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| T |
31914295 |
agtagacaaaacatgaggctctgaaagaagtgtttttccattaatctcaggttgatttcccaaaatcactccctttgc |
31914218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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