View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14228_high_13 (Length: 219)
Name: NF14228_high_13
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 46187964 - 46187822
Alignment:
| Q |
34 |
ataggagaaaaacatggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtga |
133 |
Q |
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| T |
46187964 |
ataggagaaaaacatggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtga |
46187865 |
T |
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| Q |
134 |
gaagtgtgaaacgagatagtttgataagagagtgaagttggtg |
176 |
Q |
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| T |
46187864 |
gaagtgtgaaacgagatagtttgataagagagtgaagttggtg |
46187822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 32833231 - 32833349
Alignment:
| Q |
58 |
gttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaacgagatagtttga |
157 |
Q |
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| T |
32833231 |
gttcatagttttgaagaagtaagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatgagagttttgaaaggagatggtttga |
32833330 |
T |
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| Q |
158 |
taagagagtgaagttggtg |
176 |
Q |
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| T |
32833331 |
aaaaagagtgaagttggtg |
32833349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 32846512 - 32846630
Alignment:
| Q |
58 |
gttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaacgagatagtttga |
157 |
Q |
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| T |
32846512 |
gttcatagttttgaagaagtaagaaagtttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatgagagttttgaaaggagatggtttga |
32846611 |
T |
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| Q |
158 |
taagagagtgaagttggtg |
176 |
Q |
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| T |
32846612 |
aaaaagagtgaagttggtg |
32846630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 17931440 - 17931297
Alignment:
| Q |
33 |
cataggagaaaaacatggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtg |
132 |
Q |
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||||||| |||| |||||| ||| ||||||||||||| |||| | |||| |||| | |||||||||| ||| | |||||| |||| ||||||||| || |
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| T |
17931440 |
cataggaacaaaaaatggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtatgatgctacaaaggaataggaaatatg |
17931341 |
T |
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| Q |
133 |
agaagtgtgaaacgagatagtttgataagagagtgaagttggtg |
176 |
Q |
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||| | ||||| ||||| ||||||||||||||||||||||||| |
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| T |
17931340 |
agagttttgaaaggagatggtttgataagagagtgaagttggtg |
17931297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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