View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14228_low_1 (Length: 593)

Name: NF14228_low_1
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14228_low_1
NF14228_low_1
[»] chr3 (3 HSPs)
chr3 (13-573)||(48822343-48822905)
chr3 (14-81)||(33937194-33937261)
chr3 (19-71)||(25084293-25084345)
[»] chr1 (3 HSPs)
chr1 (94-159)||(25032800-25032865)
chr1 (35-135)||(9298152-9298252)
chr1 (303-348)||(26924931-26924976)
[»] chr7 (5 HSPs)
chr7 (529-573)||(1819201-1819245)
chr7 (295-348)||(27900036-27900089)
chr7 (56-159)||(42644976-42645079)
chr7 (303-348)||(24957464-24957509)
chr7 (19-159)||(37375752-37375892)
[»] chr6 (2 HSPs)
chr6 (19-159)||(12654015-12654155)
chr6 (295-348)||(31946483-31946536)
[»] chr5 (2 HSPs)
chr5 (35-158)||(11647485-11647607)
chr5 (56-133)||(19645767-19645844)
[»] chr4 (2 HSPs)
chr4 (36-159)||(56172114-56172237)
chr4 (65-122)||(20191478-20191535)
[»] chr8 (2 HSPs)
chr8 (295-348)||(41566483-41566535)
chr8 (94-159)||(7763454-7763519)
[»] scaffold0321 (1 HSPs)
scaffold0321 (56-159)||(6827-6930)
[»] chr2 (2 HSPs)
chr2 (303-348)||(38002212-38002257)
chr2 (120-156)||(44261235-44261271)


Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Original strand, 48822343 - 48822905
Alignment:
Q  13 tgaaggcatgaatattcaggaaacttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcg 112  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48822343 tgaagacatgagtattcaggaaacttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctatttg 48822442  T
Q  113 cagattcatcccttttgttttcatcgactttaaacttgtattgtatcnnnnnnnaggcaaaaggaaaataatattaattaaaaagaaagaaatgcaggga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  48822443 cagattcatcccttttgttttcatcgactttaaacttgtattgtatctttttttaggcaaaaggaaaataatattaattaaaaagaaagaaatgcaggga 48822542  T
Q  213 ctggtggcattagacctaaactaggtacaacccaagcataatacatcgataaaacggaccatgtggacaaccctaatatatcatcacggacgcaatccag 312  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  48822543 ctggtggcattagacctgaattaggtacaacccaagcagaatacatcgataaaacgaaccatgtggacaaccctaatatatcatcacggacgcaacccag 48822642  T
Q  313 caaactcgcgtacagacgcgaaaccaagttacaaaatatcatcaccagcttttaatactgaaaatattttgagacattatgaaaatcaatgatatgacaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48822643 caaactcgcgtacagacgcgaaaccaagttacaaaatatcatcaccagcttttaatactgaaaatattttgagacattatgaaaatcaatgatatgacaa 48822742  T
Q  413 gtcacctttacattattaaatctgcaatctatctaaacatcaactga--tagggcataacatgagacaatggacaatgatctcacatcgatcaatgacac 510  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48822743 gtcacctttacattattagatctccaatctatctaaacatcaactgatctagggcataacatgagacaatagacaatgatctcacatcgatcaatgacac 48822842  T
Q  511 gttgaaaaaaggcgttgctcacactttttaaatcaaataatcattttcggattgcacgtcgga 573  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48822843 gttggaaaaaggcgttgctcacactttttaaatcaaataatcattttcggattgcacgtcgga 48822905  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 33937261 - 33937194
Alignment:
Q  14 gaaggcatgaatattcaggaaacttgaatataattctattattaggcatatgtattttctcattttat 81  Q
    |||| ||||| ||||| ||| |||||||||||||| ||||  || ||||||||||||| |||||||||    
T  33937261 gaagacatgagtattctggatacttgaatataattatatttgtatgcatatgtattttgtcattttat 33937194  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 25084293 - 25084345
Alignment:
Q  19 catgaatattcaggaaacttgaatataattctattattaggcatatgtatttt 71  Q
    ||||||||||| ||| |||||||||||||  ||||  ||||||||||||||||    
T  25084293 catgaatattctggagacttgaatataatcatatttgtaggcatatgtatttt 25084345  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 25032865 - 25032800
Alignment:
Q  94 gatgttgtgaatctattcgcagattcatcccttttgttttcatcgactttaaacttgtattgtatc 159  Q
    |||||||||||| | ||||||||||||||| ||||||||| | ||||||| || ||||||||||||    
T  25032865 gatgttgtgaatttgttcgcagattcatcctttttgtttttagcgactttgaatttgtattgtatc 25032800  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 9298252 - 9298152
Alignment:
Q  35 acttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgttttc 134  Q
    |||||||||||||  ||||  |||||||| ||| ||| |||||||||  ||||||    |||||||||| | ||||||||||||||||| ||||||||||    
T  9298252 acttgaatataatcatatttataggcataggtactttgtcattttatactattaacatggatgttgtgagtttattcgcagattcatcctttttgttttc 9298153  T
Q  135 a 135  Q
    |    
T  9298152 a 9298152  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 26924931 - 26924976
Alignment:
Q  303 cgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  26924931 cgcaatccagcaaacccgcgtacggacacgaaaccaaattacaaaa 26924976  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 529 - 573
Target Start/End: Complemental strand, 1819245 - 1819201
Alignment:
Q  529 tcacactttttaaatcaaataatcattttcggattgcacgtcgga 573  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  1819245 tcacactttctaaatcaaataatcatttttggattgcacgtcgga 1819201  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 27900036 - 27900089
Alignment:
Q  295 atcacggacgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    ||||||| ||||||||||||||| ||||||| |  |||||||||||||||||||    
T  27900036 atcacgggcgcaatccagcaaacccgcgtacgggagcgaaaccaagttacaaaa 27900089  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 42644976 - 42645079
Alignment:
Q  56 taggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgttttcatcgactttaaacttgtattg 155  Q
    |||||||||||| |||  | ||||||| ||||||    |||||||||| | | ||| ||||||||||| ||||||||| | ||| |||| ||||||||||    
T  42644976 taggcatatgtaatttgccgttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttagacttgtattg 42645075  T
Q  156 tatc 159  Q
    ||||    
T  42645076 tatc 42645079  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 24957464 - 24957509
Alignment:
Q  303 cgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    ||||||||||| |||| |||||| | ||||||||||||||||||||    
T  24957464 cgcaatccagcgaacttgcgtacgggcgcgaaaccaagttacaaaa 24957509  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 37375892 - 37375752
Alignment:
Q  19 catgaatattcaggaaacttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagatt 118  Q
    ||||| ||||||||| || |||||||| |  ||||  |||||||||||| ||| || ||||||| ||||||    |||| ||||| | | ||| || |||    
T  37375892 catgagtattcaggagacatgaatatagtcatatttgtaggcatatgtactttgtcgttttatgctattaacatggatgctgtgagtttgttcacatatt 37375793  T
Q  119 catcccttttgttttcatcgactttaaacttgtattgtatc 159  Q
    ||||||||||||||| | ||| |||  | ||||||||||||    
T  37375792 catcccttttgtttttagcgaatttggatttgtattgtatc 37375752  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 12654155 - 12654015
Alignment:
Q  19 catgaatattcaggaaacttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagatt 118  Q
    ||||| ||||| ||| ||||||||||| |  ||||  |||||||||||||||| || ||||||| ||||||    |||| ||||| | | ||||||||||    
T  12654155 catgagtattccggagacttgaatatagtcatatttgtaggcatatgtattttgtcgttttatgctattaacatggatgatgtgagtttgttcgcagatt 12654056  T
Q  119 catcccttttgttttcatcgactttaaacttgtattgtatc 159  Q
    ||||  ||||||||| | |||||||  | ||||||||||||    
T  12654055 catcatttttgtttttagcgactttggaattgtattgtatc 12654015  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 31946536 - 31946483
Alignment:
Q  295 atcacggacgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    |||| |||||||| ||||| ||| ||||||| | ||||||||||||||||||||    
T  31946536 atcaaggacgcaacccagcgaacccgcgtacgggcgcgaaaccaagttacaaaa 31946483  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 11647485 - 11647607
Alignment:
Q  35 acttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgttttc 134  Q
    |||||||||||||| |||| | |||| |||||||||| ||||||||  ||||||| |  |||||||||| | | | |||| |||||||  |||||||||     
T  11647485 acttgaatataattatattgt-aggcttatgtattttgtcattttaaattattaacgtggatgttgtgagtttgtacgcatattcatcatttttgttttt 11647583  T
Q  135 atcgactttaaacttgtattgtat 158  Q
    | ||||||| || |||||||||||    
T  11647584 agcgactttgaatttgtattgtat 11647607  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 19645844 - 19645767
Alignment:
Q  56 taggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgtttt 133  Q
    ||||||| |||||||| || ||||||| ||||||    |||||||||| ||| ||| ||||||||||| |||||||||    
T  19645844 taggcatttgtattttgtcgttttatgctattaacatggatgttgtgagtctgttcacagattcatcctttttgtttt 19645767  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 56172114 - 56172237
Alignment:
Q  36 cttgaatataattctattattaggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgttttca 135  Q
    ||||||||||||  ||||  ||||||||||||  || || ||||||||||||||    |||||||||| | | |||||||||||| || ||||||||||     
T  56172114 cttgaatataatcgtatttgtaggcatatgtacattgtcgttttatgttattaacatggatgttgtgagtttgttcgcagattcaacctttttgttttct 56172213  T
Q  136 tcgactttaaacttgtattgtatc 159  Q
      ||||||| | ||||||||||||    
T  56172214 atgactttatatttgtattgtatc 56172237  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 20191535 - 20191478
Alignment:
Q  65 gtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatc 122  Q
    ||||||| ||||||||| | |||||  |||||||||||| ||| ||||||||||||||    
T  20191535 gtattttgtcattttatatcattaactcagatgttgtgattctgttcgcagattcatc 20191478  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 41566535 - 41566483
Alignment:
Q  295 atcacggacgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    ||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||    
T  41566535 atcacggacgcaatccagcgaacccgcgtac-ggcgcgaaaccaagttacaaaa 41566483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 7763519 - 7763454
Alignment:
Q  94 gatgttgtgaatctattcgcagattcatcccttttgttttcatcgactttaaacttgtattgtatc 159  Q
    |||||||||||| | |||| |||||||||  || |||||| || ||||||||| ||||||||||||    
T  7763519 gatgttgtgaatttgttcgtagattcatcttttctgtttttattgactttaaatttgtattgtatc 7763454  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 6930 - 6827
Alignment:
Q  56 taggcatatgtattttctcattttatgttattaatgcagatgttgtgaatctattcgcagattcatcccttttgttttcatcgactttaaacttgtattg 155  Q
    |||||||||||| |||  ||||||||| ||||||    |||||||||| | | ||| ||||||||||| ||||||||| | ||| ||| || ||||||||    
T  6930 taggcatatgtactttaccattttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttgaatttgtattg 6831  T
Q  156 tatc 159  Q
    ||||    
T  6830 tatc 6827  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 38002257 - 38002212
Alignment:
Q  303 cgcaatccagcaaactcgcgtacagacgcgaaaccaagttacaaaa 348  Q
    ||||| ||||||||| ||||||| | ||||||||||||||||||||    
T  38002257 cgcaacccagcaaacccgcgtacgggcgcgaaaccaagttacaaaa 38002212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 44261271 - 44261235
Alignment:
Q  120 atcccttttgttttcatcgactttaaacttgtattgt 156  Q
    |||||||||||||| |||||||||||| |||||||||    
T  44261271 atcccttttgtttttatcgactttaaatttgtattgt 44261235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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