View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14228_low_11 (Length: 292)
Name: NF14228_low_11
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_low_11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 128 - 292
Target Start/End: Original strand, 6251584 - 6251751
Alignment:
| Q |
128 |
gaacatactctctacgatcttttttataaattgttccataaaatttgatgcattacatccatattataaattaaatacatcaatttttattgactaattt |
227 |
Q |
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| T |
6251584 |
gaacatactctctacaatcttttttataaattgttcaataaaatttgatgcattacatccatattataaactaaatacatcaatttttattgactaattt |
6251683 |
T |
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| Q |
228 |
gtgat---nnnnnnnntaccattaagagtaaattgtatggcgggtagtagagactaattttattttat |
292 |
Q |
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| T |
6251684 |
gtgataaaaaaaaaaataccattaagagtaaattgtatggcgggtagtagagactaattttattttat |
6251751 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6185730 - 6185777
Alignment:
| Q |
18 |
aaattaatcattcagcttagctacttattatccaatgattttcagatc |
65 |
Q |
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| T |
6185730 |
aaattaatcattcagcctagctacttagtatccaatgattttcagatc |
6185777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6192246 - 6192293
Alignment:
| Q |
18 |
aaattaatcattcagcttagctacttattatccaatgattttcagatc |
65 |
Q |
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| T |
6192246 |
aaattaatcattcagcctagctacttagtatccaatgattttcagatc |
6192293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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