View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14228_low_14 (Length: 237)

Name: NF14228_low_14
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14228_low_14
NF14228_low_14
[»] chr5 (5 HSPs)
chr5 (17-191)||(2210764-2210928)
chr5 (17-75)||(2198575-2198633)
chr5 (94-123)||(37455439-37455468)
chr5 (123-151)||(34384702-34384730)
chr5 (94-122)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (94-151)||(1961372-1961427)
chr8 (94-122)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (122-151)||(22540504-22540533)
chr1 (94-122)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (94-122)||(31502526-31502554)
chr7 (94-122)||(44350864-44350892)
chr7 (94-122)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (123-151)||(19447273-19447301)
chr4 (94-122)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (94-122)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (123-159)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 2210928 - 2210764
Alignment:
Q  17 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210928 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 2210829  T
Q  117 --cacaatagtattaaagagagtgttcaaaagagagtatagctagtcttactcaatctactaattatgtacatagaa 191  Q
      ||||||||||||||||            ||||||| |||||||||||||||||||||||||||||||||||||||    
T  2210828 cacacaatagtattaaag------------agagagtgtagctagtcttactcaatctactaattatgtacatagaa 2210764  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 2198633 - 2198575
Alignment:
Q  17 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaa 75  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  2198633 cagagagctctgatttgaaaattagcataaaaattaaacgaaaattaaattaaattaaa 2198575  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 37455439 - 37455468
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaata 123  Q
    ||||||||||||||||||||||||||||||    
T  37455439 gttcaattttcaaagtgtagactcacaata 37455468  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 34384730 - 34384702
Alignment:
Q  123 agtattaaagagagtgttcaaaagagagt 151  Q
    |||||||||||||||||||||||||||||    
T  34384730 agtattaaagagagtgttcaaaagagagt 34384702  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 41330483 - 41330455
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  41330483 gttcaattttcaaagtgtagactcacaat 41330455  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 1961372 - 1961427
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaatagtattaaagagagtgttcaaaagagagt 151  Q
    ||||||||||||||||||||||  ||||||  |||| |||||||||||||||||||||    
T  1961372 gttcaattttcaaagtgtagaccaacaata--attagagagagtgttcaaaagagagt 1961427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 16983484 - 16983512
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  16983484 gttcaattttcaaagtgtagactcacaat 16983512  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 22540504 - 22540533
Alignment:
Q  122 tagtattaaagagagtgttcaaaagagagt 151  Q
    ||||||||||||||||||||||||||||||    
T  22540504 tagtattaaagagagtgttcaaaagagagt 22540533  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 30679001 - 30678973
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  30679001 gttcaattttcaaagtgtagactcacaat 30678973  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 31502554 - 31502526
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  31502554 gttcaattttcaaagtgtagactcacaat 31502526  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 44350892 - 44350864
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  44350892 gttcaattttcaaagtgtagactcacaat 44350864  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 46517381 - 46517409
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  46517381 gttcaattttcaaagtgtagactcacaat 46517409  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 19447273 - 19447301
Alignment:
Q  123 agtattaaagagagtgttcaaaagagagt 151  Q
    |||||||||||||||||||||||||||||    
T  19447273 agtattaaagagagtgttcaaaagagagt 19447301  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 50164485 - 50164513
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  50164485 gttcaattttcaaagtgtagactcacaat 50164513  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 29388684 - 29388656
Alignment:
Q  94 gttcaattttcaaagtgtagactcacaat 122  Q
    |||||||||||||||||||||||||||||    
T  29388684 gttcaattttcaaagtgtagactcacaat 29388656  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 38464304 - 38464340
Alignment:
Q  123 agtattaaagagagtgttcaaaagagagtatagctag 159  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  38464304 agtattagagagagtgttcaaaagagagtattgctag 38464340  T

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