View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14228_low_2 (Length: 507)
Name: NF14228_low_2
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_low_2 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 38)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 17951189 - 17951679
Alignment:
| Q |
1 |
gaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
17951189 |
gaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttattcgaa |
17951288 |
T |
|
| Q |
101 |
aatggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||| | |||||||||||||| |
|
|
| T |
17951289 |
aatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttttgcagaagttgagcttc |
17951388 |
T |
|
| Q |
201 |
tgctagtaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttatacccaatttg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
17951389 |
tgctagaaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttataattctatgcataacttata-ccaatttg |
17951487 |
T |
|
| Q |
301 |
cttgcttcatattttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaaaagccattata |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17951488 |
cttgcttgatattttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaaaagccattata |
17951587 |
T |
|
| Q |
401 |
atattgtatcacttgttgtaatgtttttgttgaattgtaagtttgtatacaagttagttaatggtttcattcaggttgtcaactggtctatg |
492 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17951588 |
ttaatgtatcacttgttgtaatgtttttgttgaattgtaagtttggatacaagttagttaatggtttcattcaggtggtcaactggtctatg |
17951679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 18109796 - 18110182
Alignment:
| Q |
1 |
gaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcagga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
18109796 |
gaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgttatcagga |
18109895 |
T |
|
| Q |
101 |
aatggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| |||| |||| | ||||||||||||| |
|
|
| T |
18109896 |
aatggaggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttgagcttc |
18109995 |
T |
|
| Q |
201 |
tgctagtaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttatacccaatttg |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18109996 |
tgctagtaaaggttagtgaacctaatttaagttgaattgatcatg--atagagtatttttctttattttgtaattctatgcataacttatatccaatttg |
18110093 |
T |
|
| Q |
301 |
cttgcttcatattttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaa |
389 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
18110094 |
tttgcttcatattttgtcaagtgattatgtatgtggaagatcctacactgctatgcaaatcgttgatataatttttcaaacagagccaa |
18110182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18017388 - 18017646
Alignment:
| Q |
1 |
gaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcagga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || || |||||||| || ||||||| |||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
18017388 |
gaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttctcattagaa |
18017487 |
T |
|
| Q |
101 |
aatggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18017488 |
aatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgtagaagttgagcttc |
18017587 |
T |
|
| Q |
201 |
tgctagtaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttt |
259 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18017588 |
tgctaataaagattagtgaacgtactttaagttgaattgatcatgatatagagtatttt |
18017646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 19401095 - 19401343
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
19401095 |
gatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaat |
19401194 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
19401195 |
ggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagttgagcttttgc |
19401294 |
T |
|
| Q |
204 |
tagtaaaggttagtgaacctactttaagttgaattgatcacgatataga |
252 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
19401295 |
tagtaaaggttagtgaacctaatttaagttgaattgatcatgatataga |
19401343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 19352774 - 19352968
Alignment:
| Q |
17 |
taaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcata |
116 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
19352774 |
taaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcata |
19352873 |
T |
|
| Q |
117 |
ctttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
19352874 |
ttttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgtagaatatgagcttctgctagtaaag |
19352968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 19456665 - 19456919
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19456665 |
gatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaat |
19456764 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||| |||| || |||| |
|
|
| T |
19456765 |
ggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaattgaactcctgc |
19456864 |
T |
|
| Q |
204 |
tagtaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttt |
259 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
19456865 |
-agtaaaggttagtgaaactgctttcagtttaattgatcaaactatagagtatttt |
19456919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 250 - 493
Target Start/End: Original strand, 19401377 - 19401613
Alignment:
| Q |
250 |
agagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatcctatact |
349 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || ||| |||| |||||||||||||| ||||||||||||| |||||||||||||| | | |
|
|
| T |
19401377 |
agagtatttttgtttattttgtaattctatgcataacttttatccattttgtttgcttcatattttatcaggtgattatgcatgtggaagatcctgcatt |
19401476 |
T |
|
| Q |
350 |
gctatggaaatcgttgatataatttaccaaacagagccaaaagccattataatattgtatcacttgttgtaatgtttttgttgaattgtaagtttgtata |
449 |
Q |
| |
|
| |||| ||||| |||||||||||| |||||||||||||| ||| || ||||| |||||||||||| ||||| ||||||||||| ||| |||| |
|
|
| T |
19401477 |
gttatgcaaatctttgatataattttccaaacagagccaa-------tatgttactgtattacttgttgtaatttttttcttgaattgtaattttttata |
19401569 |
T |
|
| Q |
450 |
caagttagttaatggtttcattcaggttgtcaactggtctatgt |
493 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
19401570 |
caagttagttactggtttcattcaggttgccaactggtctatgt |
19401613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 19465718 - 19465951
Alignment:
| Q |
1 |
gaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcagga |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || | | |||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
19465718 |
gaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagga |
19465817 |
T |
|
| Q |
101 |
aatggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||| || ||||| ||||||| |||||||||||||| |||||| |||| ||||||| | |
|
|
| T |
19465818 |
aatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgcagaaattgagctcc |
19465917 |
T |
|
| Q |
201 |
tgctagtaaaggttagtg-aacctactttaagtt |
233 |
Q |
| |
|
| | ||| |||||||||| ||||||||| ||||| |
|
|
| T |
19465918 |
taccagttaaggttagtgaaacctacttcaagtt |
19465951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 19394518 - 19394748
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
||||| || ||| |||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19394518 |
gatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaat |
19394617 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||| ||| || ||||| | ||||| |||||||||||||| |||||| |||| ||||| | |||| |
|
|
| T |
19394618 |
ggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgaggtcctgc |
19394717 |
T |
|
| Q |
204 |
tagtaaaggttagtg-aacctactttaagtt |
233 |
Q |
| |
|
| | |||||||||| ||||||||| ||||| |
|
|
| T |
19394718 |
caattaaggttagtgaaacctacttcaagtt |
19394748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 18872492 - 18872310
Alignment:
| Q |
21 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatacttt |
120 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
18872492 |
agaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatacttt |
18872393 |
T |
|
| Q |
121 |
cggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||||||||| ||| ||| || ||||| ||||||||| |||||||||||| |||||| ||| ||||||| |||| |
|
|
| T |
18872392 |
tggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttcgcagatattgagctcctgc |
18872310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 19382262 - 19382492
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||||||| ||| ||| || ||||| || || |||||||| ||||||| ||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
19382262 |
gatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttctttatttcttattaggaaat |
19382361 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||| ||| || ||||| | ||||| |||||||||||||| |||||| |||| ||||||| |||| |
|
|
| T |
19382362 |
ggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgagctgctgc |
19382461 |
T |
|
| Q |
204 |
tagtaaaggttagtg-aacctactttaagtt |
233 |
Q |
| |
|
||| |||||||||| ||||||||| ||||| |
|
|
| T |
19382462 |
cagttaaggttagtgaaacctacttcaagtt |
19382492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 17943323 - 17943536
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||| | || || |||| |
|
|
| T |
17943323 |
gatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttttattagaaaat |
17943422 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||| ||| ||| ||||| |||||||| ||||||||||||| |||||| |||| |||||| ||| |
|
|
| T |
17943423 |
ggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaaactgagctgctgt |
17943522 |
T |
|
| Q |
204 |
tagtaaaggttagt |
217 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
17943523 |
tagttaaggttagt |
17943536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 16678586 - 16678805
Alignment:
| Q |
14 |
ctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgc |
113 |
Q |
| |
|
||||||||||||||||||| || || ||||||| || ||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
16678586 |
ctctaaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacac |
16678685 |
T |
|
| Q |
114 |
atactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaaaggt |
213 |
Q |
| |
|
||||| || ||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||| | || |||| ||||| |
|
|
| T |
16678686 |
atactatcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggt |
16678785 |
T |
|
| Q |
214 |
tagtgaacctactttaagtt |
233 |
Q |
| |
|
||||| ||||| |||||||| |
|
|
| T |
16678786 |
tagtggacctattttaagtt |
16678805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 25464425 - 25464608
Alignment:
| Q |
7 |
gatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatgga |
106 |
Q |
| |
|
||||| ||| |||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
25464425 |
gatgactctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatgga |
25464524 |
T |
|
| Q |
107 |
ggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaa |
190 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||| ||| ||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
25464525 |
ggcatgcatactttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaaccactttcgcagaa |
25464608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 18148187 - 18148400
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||||||| ||| ||| || ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18148187 |
gatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaat |
18148286 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||| ||||||||||| | || |||||||| || || ||||| ||| |||| ||||||||||||| |||||| |||| |||||| |||| |
|
|
| T |
18148287 |
ggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgccgaagctgagctcctgc |
18148386 |
T |
|
| Q |
204 |
tagtaaaggttagt |
217 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
18148387 |
tagttaaggttagt |
18148400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 17726168 - 17725989
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
17726168 |
gatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaaaat |
17726069 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||| ||| || ||||| ||||| || ||||||||||||| |||| |
|
|
| T |
17726068 |
ggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
17725989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 19027397 - 19027218
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
19027397 |
gatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaaaat |
19027298 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||| ||| || ||||| ||||| || ||||||||||||| |||| |
|
|
| T |
19027297 |
ggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
19027218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 18117325 - 18117506
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||||||| ||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
18117325 |
gatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatgtttcttattaggaaat |
18117424 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcg |
185 |
Q |
| |
|
|||||||||| ||||||||||| | || |||||||| || || ||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
18117425 |
ggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcg |
18117506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 256 - 387
Target Start/End: Original strand, 18017677 - 18017808
Alignment:
| Q |
256 |
tttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatcctatactgctatg |
355 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| | || |
|
|
| T |
18017677 |
tttttgtttattttgtaattctatgcataacttatatccattttgtttgcttcatattttatcaggtgattatgtatgtggaagatcctgcactgttttg |
18017776 |
T |
|
| Q |
356 |
gaaatcgttgatataatttaccaaacagagcc |
387 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
18017777 |
aaaatcgttgatataattttccaaacagagcc |
18017808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 19377005 - 19377160
Alignment:
| Q |
21 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatacttt |
120 |
Q |
| |
|
|||||||||||| || || |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
19377005 |
agaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggcatgcatacttt |
19377104 |
T |
|
| Q |
121 |
cggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaa |
176 |
Q |
| |
|
| |||||| || |||| ||| ||| ||| ||||| |||||||| ||||||||||| |
|
|
| T |
19377105 |
cagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaa |
19377160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 19462549 - 19462762
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||||||| ||| ||| || ||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
19462549 |
gatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttgtttcttattcggaaat |
19462648 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||| ||||||||||| | || |||||||| || || ||||| ||||||| ||||||||||||| |||||| |||| |||||| |||| |
|
|
| T |
19462649 |
ggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgcagaaactgagctcctgc |
19462748 |
T |
|
| Q |
204 |
tagtaaaggttagt |
217 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
19462749 |
tagttaaggttagt |
19462762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 18166525 - 18166705
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| ||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
18166525 |
gatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattagaaaat |
18166624 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttc |
184 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| ||| ||| || ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
18166625 |
ggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttc |
18166705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 14895004 - 14894797
Alignment:
| Q |
21 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatacttt |
120 |
Q |
| |
|
||||||| |||| ||||| |||||| | ||||||||||||||||| |||||||||| ||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
14895004 |
agaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggcatgcatacttt |
14894905 |
T |
|
| Q |
121 |
cggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaaaggttagtg-a |
219 |
Q |
| |
|
|||||||| ||||||| ||| ||| || ||||| |||||||| ||||||||| |||||| | | || ||||||| | |||||| |||||||||| | |
|
|
| T |
14894904 |
cggtttattgatggagtaggtgacaagctctatgttactttgatcccaaagttaaacaactttggaaaaaattgagctccggctagttaaggttagtgta |
14894805 |
T |
|
| Q |
220 |
acctactt |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
14894804 |
acctactt |
14894797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 19335381 - 19335673
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
||||| || ||| ||| |||||||||||| || || ||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
19335381 |
gatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaaaat |
19335480 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||| |||||||||||| | ||| |||||||| ||| | ||||| |||||||| |||||||| || | ||| |||| ||||||| |||| |
|
|
| T |
19335481 |
ggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagttgaacatgtttaaaagaaattgagctcctgc |
19335580 |
T |
|
| Q |
204 |
--tagtaaaggttagt-gaacctacttta-agttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttatacc |
293 |
Q |
| |
|
|||| ||||||||| |||||||||| | |||| ||| ||| |||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
19335581 |
tatagttaaggttagtggaacctacttcatagttttattaatctgactatagagtatttgt-tttattttgtaattctatgcaaaacttatacc |
19335673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 251 - 487
Target Start/End: Original strand, 19353020 - 19353240
Alignment:
| Q |
251 |
gagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatcctatactg |
350 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||||||||||||||||| | ||| |
|
|
| T |
19353020 |
gagtattttgcttaattttgtaattctatgcataacttatatacattttgtttgcttcatattttatcaggtgattatgtatgtggaagatcatgcact- |
19353118 |
T |
|
| Q |
351 |
ctatggaaatcgttgatataatttaccaaacagagccaaaagccattataatattgtatcacttgttgtaatgtttttgttgaattgtaagtttgtatac |
450 |
Q |
| |
|
|| |||||||| || ||||||||||| || || ||| || | |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19353119 |
ct--------------tataattttcc-aacagagccaagagtcaatatgttactttatcacttgttgtaatgtttttgttgaattgtaagtttttatac |
19353203 |
T |
|
| Q |
451 |
aagttagttaatggtttcattcaggttgtcaactggt |
487 |
Q |
| |
|
|| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
19353204 |
aatttaaataatggtttcattcaggttgtcatctggt |
19353240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 19355099 - 19355374
Alignment:
| Q |
19 |
aaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatact |
118 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
19355099 |
aaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttctttgtttctaattagaaaatggaggcatgcatact |
19355198 |
T |
|
| Q |
119 |
ttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgcta--gtaaaggttag |
216 |
Q |
| |
|
|||||||| | || ||||| || ||| | ||||| |||||||| ||||||||||| ||| |||| ||||||| |||||| || |||||||| |
|
|
| T |
19355199 |
ttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaacgggtttaaaagaaattgagctcctgctattgttaaggttag |
19355298 |
T |
|
| Q |
217 |
t-gaacctacttta-agttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttata |
291 |
Q |
| |
|
| |||||||||| | |||| ||||||| |||| ||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
19355299 |
tggaacctacttcatagttttattgatctgactataaagtatttgt-tttattttgtaattctatgcaaaacttata |
19355374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 18104866 - 18105078
Alignment:
| Q |
5 |
atgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatg |
104 |
Q |
| |
|
||||||||||| ||| ||| || ||||| | || ||||||||||||||||||||||| |||| |||||||| |||||| ||||||| || |||||||| |
|
|
| T |
18104866 |
atgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatgtttcttattaggaaatg |
18104965 |
T |
|
| Q |
105 |
gaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgct |
204 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| || || ||||| |||||||| ||||||||||||| |||||| ||| |||||| ||||| |
|
|
| T |
18104966 |
gaggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgccgaaactgagctcctgct |
18105065 |
T |
|
| Q |
205 |
agtaaaggttagt |
217 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
18105066 |
agttaaggttagt |
18105078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 406 - 488
Target Start/End: Original strand, 18110220 - 18110302
Alignment:
| Q |
406 |
gtatcacttgttgtaatgtttttgttgaattgtaagtttgtatacaagttagttaatggtttcattcaggttgtcaactggtc |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18110220 |
gtatcacttgttgtaatgtttttgttgaattgtaagtttttatacaagttagttaatggtttcattcaggctgtcaactggtc |
18110302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 19426059 - 19426181
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || || |||| |
|
|
| T |
19426059 |
gatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttccttattagaaaat |
19426158 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggttt |
126 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
19426159 |
ggaagcatgcatactttcggttt |
19426181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 19438315 - 19438496
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||||||| ||| ||| || ||||| || || |||||||| ||||||||||||||||| |||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
19438315 |
gatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggttctatgtttcttattaggaaat |
19438414 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcg |
185 |
Q |
| |
|
|||||||||| ||||||||||| | || |||| || || |||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
19438415 |
ggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagctttcg |
19438496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 19415568 - 19415766
Alignment:
| Q |
19 |
aaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatact |
118 |
Q |
| |
|
||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || || ||||| ||||||||||||| |
|
|
| T |
19415568 |
aaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttattagaaaatgcaggcatgcatact |
19415667 |
T |
|
| Q |
119 |
ttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaaaggttagt |
217 |
Q |
| |
|
| |||||||| || |||||| || || ||||| |||||| | ||||||||||||| |||||| |||| |||||| | | |||| ||||||||| |
|
|
| T |
19415668 |
tccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaaactgagctgcagttagttaaggttagt |
19415766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 24493375 - 24493241
Alignment:
| Q |
40 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgg |
139 |
Q |
| |
|
|||||||| || |||| ||||||||| ||| ||| |||||| |||| ||||| || |||||||||||||| || |||| |||||||| ||||||||| |
|
|
| T |
24493375 |
atgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagtgg |
24493276 |
T |
|
| Q |
140 |
gtaacagactttatgtaactttgatggtaaagtta |
174 |
Q |
| |
|
|| |||| | ||||||||||||||||| |||||| |
|
|
| T |
24493275 |
gtgacaggatctatgtaactttgatggtgaagtta |
24493241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 16679007 - 16679071
Alignment:
| Q |
278 |
atgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
342 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
16679007 |
atgcataacttatatccatttcatttgcttcatattttctcaggtgattatgcatgtggaagatc |
16679071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 19458617 - 19458695
Alignment:
| Q |
311 |
attttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaa |
389 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||| ||| |||| ||||| | |||||||||| |||||||||||||| |
|
|
| T |
19458617 |
attttatcaggtgattatatttgtggaagatcctgcgctgttatgcaaatcatggatataattttccaaacagagccaa |
19458695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 18017853 - 18017886
Alignment:
| Q |
459 |
taatggtttcattcaggttgtcaactggtctatg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18017853 |
taatggtttcattcaggttgtcaactggtctatg |
18017886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 17725878 - 17725795
Alignment:
| Q |
306 |
ttcatattttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaa |
389 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| ||| ||| |||| ||| ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
17725878 |
ttcatattttatcaggtgattatatttgtggcagaacctgcactgttattcaaatcgtggatataattttccaaactgagccaa |
17725795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 19027107 - 19027024
Alignment:
| Q |
306 |
ttcatattttgtcaggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaa |
389 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| ||| ||| |||| ||| ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
19027107 |
ttcatattttatcaggtgattatatttgtggcagaacctgcactgttattcaaatcgtggatataattttccaaactgagccaa |
19027024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 24496815 - 24496728
Alignment:
| Q |
40 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatactttcggtttat |
128 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| ||| |||||| ||||||||| || ||||||||| ||||| |||||| || |||||| |
|
|
| T |
24496815 |
atgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg-ggcatacatactatcagtttat |
24496728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 8460935 - 8461164
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| ||| |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
8460935 |
gatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttcttattaggaaat |
8461034 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||| ||||| ||| || |||| || ||||||||||||||||| || ||||| |||| ||||||| |||| |
|
|
| T |
8461035 |
ggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaattgagctcctgc |
8461134 |
T |
|
| Q |
204 |
tagtaaaggttagtgaacctactttaagtt |
233 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
8461135 |
tagcaaaggttagtgaacctactttaagtt |
8461164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 8461232 - 8461327
Alignment:
| Q |
250 |
agagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggt-gattatgtatgtggaagatcct |
344 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| | | |||| ||||||| |||||| |||||| ||||||| |||||| ||||||| |
|
|
| T |
8461232 |
agagtattttgcttgattttgtaattctatgcataacttatgtctattttgtttgcttcgtattttatcaggtggattatgcatgtggcagatcct |
8461327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 2709198 - 2708981
Alignment:
| Q |
10 |
gaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggc |
109 |
Q |
| |
|
|||||| ||| |||||||||||| || || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
2709198 |
gaatctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggagga |
2709099 |
T |
|
| Q |
110 |
atgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaa |
209 |
Q |
| |
|
| |||||| ||||||||| ||||||| ||| ||| || ||||||||||||||| |||||||||| ||||||| ||||| | |||||||| | ||| | |
|
|
| T |
2709098 |
acacatactatcggtttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttctacaagtta |
2708999 |
T |
|
| Q |
210 |
aggttagtgaacctactt |
227 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2708998 |
aggttagtgaacctactt |
2708981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 15536917 - 15537126
Alignment:
| Q |
19 |
aaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatact |
118 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
15536917 |
aaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcatact |
15537016 |
T |
|
| Q |
119 |
ttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgctagtaaaggttagt- |
217 |
Q |
| |
|
||||||||| || ||| ||| ||| | ||||| |||||||| ||||||||||| | |||| |||| ||||||| |||||||| ||||| ||| |
|
|
| T |
15537017 |
ttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcacagaaattgagctcctgctagttaaggtcagtg |
15537116 |
T |
|
| Q |
218 |
gaacctactt |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
15537117 |
gaacctactt |
15537126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 13665579 - 13665366
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
||||| || ||| |||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||| ||||||||||||||||| || || |||| |
|
|
| T |
13665579 |
gatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttctttgtttcttattagaaaat |
13665480 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataactttcgtagaagttgagcttctgc |
203 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||||| ||| || ||| | |||||||||||||||||||||| |||||| || | |||||| ||| |
|
|
| T |
13665479 |
ggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttcgcaggaactgagctgctgt |
13665380 |
T |
|
| Q |
204 |
tagtaaaggttagt |
217 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
13665379 |
tagttaaggttagt |
13665366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 21955 - 22134
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| | |||| |
|
|
| T |
21955 |
gatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttctcattacaaaat |
22054 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| ||| || ||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
22055 |
ggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaacaacttt |
22134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 2201 - 2022
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
2201 |
gatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaat |
2102 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| ||| || ||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
2101 |
ggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaacaacttt |
2022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 2731 - 2551
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctggggg-atttgtggttctttgtttctcatcaggaaa |
102 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||| |||| |||||||||||||||||| | ||| |
|
|
| T |
2731 |
gatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttctcattacaaaa |
2632 |
T |
|
| Q |
103 |
tggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||| ||| || ||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
2631 |
tggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaacaacttt |
2551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 6772 - 6951
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
6772 |
gatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaat |
6871 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| ||| || ||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
6872 |
ggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaacaacttt |
6951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 11870 - 12049
Alignment:
| Q |
4 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
103 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
11870 |
gatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcattacaaaat |
11969 |
T |
|
| Q |
104 |
ggaggcatgcatactttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaataacttt |
183 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| ||| || ||||| |||| ||| ||||||||||| |||||| |
|
|
| T |
11970 |
ggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaacaacttt |
12049 |
T |
|
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