View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14228_low_4 (Length: 470)
Name: NF14228_low_4
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Complemental strand, 41357717 - 41357274
Alignment:
| Q |
17 |
taaaggaataggcttaggaagataaaacttataatccattaatccaaaacactaaatttgcatttgactttcttcttttttcttatattatggtgacatt |
116 |
Q |
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| T |
41357717 |
taaaggaataggcttaggaagataaaacttataatccactaatccaaaacactaaatttgcatttgactttcttcttttttcttatattatggtgacatt |
41357618 |
T |
|
| Q |
117 |
gtcttacaatgttcctaatttttgtcatgtatcttttaattcagtccacggggtcatttttcctagacaaaagtaccacacttgggagcctaatgggagt |
216 |
Q |
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| T |
41357617 |
gtcttacaatgttcctaatttttgtcatgtatcttttaattcagtccgcggggtcatttttcctagacaaaagtaccacacttgggagcctaatgggagt |
41357518 |
T |
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| Q |
217 |
caatagcattgtagagctatctagaagatcaataagaggaaccaaaacagatatgttcaaaagcaagaaagatcataacaagttcaaattcagctcatgc |
316 |
Q |
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| T |
41357517 |
caatagcattgtagagctatctagaagatcaataagaggaaccaaaacagaaatgttcaaaagcaagaaagatcataacaagttcaaattcagctcatgc |
41357418 |
T |
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| Q |
317 |
ttactctgtctatgctcaagcagaactagagaagctgaagttgctcataatcagaaaaataatcctccatctcttggtcaatttc-tgccgttgaaagaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
41357417 |
ttactctgtctatgctcaagcagaactagagaagctgaagttgctcataatcagaaaagtaatcctccatctcttggtcaatttcttgccgttgaaagaa |
41357318 |
T |
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| Q |
416 |
gagttgctaatggaaatagaaaatgccacagaaacaatcatatt |
459 |
Q |
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| T |
41357317 |
gagttgctaatggaaatagaaaaagccacagaaacaatcatatt |
41357274 |
T |
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