View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14228_low_5 (Length: 409)
Name: NF14228_low_5
Description: NF14228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14228_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 40695587 - 40695951
Alignment:
| Q |
10 |
ttatactttacacatttcctatttcctctataaaatctcatatttatatcattatcaacactcttcatcactttagaatatccgaaatccttttaaaaat |
109 |
Q |
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| T |
40695587 |
ttatactttacacatttcctatttcctctataaaatctcatatttatatcattatcaac--ttttcatcactttagaatatccgaaatccttttaaaaaa |
40695684 |
T |
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| Q |
110 |
cctt-aaatctatgataaaattaaagactgaaagctagaaaaataatttttgtgagcaaaatgttgcggtttgatgtagtgtgatgccgcaattgtgccc |
208 |
Q |
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| T |
40695685 |
ccctcaaatctatgataaaattaaagactgaaagctagaaaaataatttttgtgagcaaaatgttgcggtttgatgtagtgtgatgccgccattgtgccc |
40695784 |
T |
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| Q |
209 |
aaaatgttacggtgttaaaatgtgatttttactgtaatttacgatcgcaccacgattgcaatctgatacggttggagaaaccgcaatattgcagccgcat |
308 |
Q |
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| T |
40695785 |
aaaa--------tgttaaaatgtgatttttactgtaatttacaatcgcaccacaattgcaatctgatacggttggagaaaccgcaatattgcagccgcat |
40695876 |
T |
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| Q |
309 |
cgatgtcatcaacactttgaaacaatgctctatgcaactcttttgaaatttccatcttcttttgttctacactagagggaaggag |
393 |
Q |
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| T |
40695877 |
cgatgtcatc----------aacaatgctctatccaactcttttgaaatttccatcttcttttgttctacactagagggaaggag |
40695951 |
T |
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