View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_1 (Length: 747)
Name: NF14229_high_1
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 310 - 737
Target Start/End: Original strand, 42305947 - 42306379
Alignment:
| Q |
310 |
aaaaggattcaagactaaaaatggtcgaggtaaacctagatatattgaaattagggtttgcccaaaaacttcaatcaaaggca-----tgtcacagtgca |
404 |
Q |
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| T |
42305947 |
aaaaggattcaagactaaaaatggtcgaggtaaacctagatatattgaaattagggtttgccaaaaaacttcaatcaaaggcacatcatgtcacagtgca |
42306046 |
T |
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| Q |
405 |
catcatgtgattatatatgaattatgtcattatctcaaattcttatgacgtaaaattgaagaataggataggagacatacacatgtcccgcagaagcagt |
504 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42306047 |
catcatgtgattatatatgaatcatgtcattatctcaaattattatgacgtaaaattgaagaataggataggagacatacacatgtccagcagaagcagt |
42306146 |
T |
|
| Q |
505 |
aaacgtaagagccttagaatttgttgatgaatctacaagttcgacacttgaattccaaacaagatgatattgacttcaaaggcaattcctataacaacaa |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306147 |
aaacgtaagagccttagaatttgttgatgaatctacaagttcgacacttgaattccaaacaagatgatattgacttcaaaggcaattcctataacaacaa |
42306246 |
T |
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| Q |
605 |
aaattcaatgaaaaacatgttaatgaatcaaaagaatatgaattcaaaggaagagtgaaaagagattagtgctttacctatttcgcctcgtttctcatga |
704 |
Q |
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| T |
42306247 |
aaattcaatgaaaaacacgttaatgaatcaaaagaatatgaattcaaaggaagagtgaaaagagattagtgctttacctatttcgcctcgtttctcatca |
42306346 |
T |
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| Q |
705 |
cacgccgctaatccccatagtccctatgctact |
737 |
Q |
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| T |
42306347 |
cacgccgctaatccccatagtccctatgctact |
42306379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 42305631 - 42305908
Alignment:
| Q |
18 |
caggaataccattgaacagaataatatacagaaagtaatttatcgattttaactttctagctcaagaaaacttggtttatagaaaaattacagaaatttg |
117 |
Q |
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| T |
42305631 |
caggaataccattgaacagaataatatacagaaagtaatttatcgattttaactttctagctcaagaaaacttggtttatagaaaaattacagaaatttg |
42305730 |
T |
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| Q |
118 |
tagttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataattgaattattgaggataagtttttcttagctttgggatcc |
217 |
Q |
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| T |
42305731 |
tagttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataattgaattattgaggataagttttgcttagctttgggatcc |
42305830 |
T |
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| Q |
218 |
atatacaatattttattggattcaagattgtagcttaattcagttgacaaagacaatgttgtataatacatgcaaggt |
295 |
Q |
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| T |
42305831 |
atatacaatattttattggattcaagattgtagcttaattcagttgacaaagacaatgttgtataatacatgcaaggt |
42305908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 43904344 - 43904407
Alignment:
| Q |
121 |
ttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataattgaatt |
184 |
Q |
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| T |
43904344 |
ttagtttttttgttccttaaattatggtgtagatttaaatttaaattttaaaaataattgaatt |
43904407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 50719565 - 50719484
Alignment:
| Q |
114 |
tttgtagttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataattgaattattgaggataa |
195 |
Q |
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| T |
50719565 |
tttgtagttagctttttagttccttaaattatgatgtagatttaaatataaatttgaaaaatagttgagttgttaaggataa |
50719484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 50793283 - 50793364
Alignment:
| Q |
114 |
tttgtagttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataattgaattattgaggataa |
195 |
Q |
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||||||||||| | |||||||| |||||||| | || | |||||||||||||||| |||||| |||| || || ||||||| |
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| T |
50793283 |
tttgtagttagctttttagttccttaaattatgatgtagatttaaatataaatttgaaaaatagttgagttgttaaggataa |
50793364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 7183529 - 7183467
Alignment:
| Q |
115 |
ttgtagttagttatttagttctttaaattacggtgcatatttaaatataaattttgaaaataa |
177 |
Q |
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|||||||||||| ||||||||||||| ||| |||| | ||| |||| |||||||| ||||||| |
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| T |
7183529 |
ttgtagttagttttttagttctttaagttatggtgtagattcaaatttaaattttaaaaataa |
7183467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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