View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14229_high_14 (Length: 447)
Name: NF14229_high_14
Description: NF14229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14229_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 19602906 - 19602589
Alignment:
| Q |
13 |
aatattaaagtagaaaattaaataaaagattaacatgcacttacaatctctttctttttaagggttttctcgacgatgactttgaaaaaacattgtgact |
112 |
Q |
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| T |
19602906 |
aatattaatgtagaaaattaaataaaagattaacatgcacttacaatctctttctttttaagggttttctcgacgatgactttgaaaaaacattgtgact |
19602807 |
T |
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| Q |
113 |
tatggaactgatgaacactactcggagaagacattgtgatgattcgatggaaacactgcacgaatacagtattatataacagaggaatttatagatataa |
212 |
Q |
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| T |
19602806 |
tatggaactgatgaacactactcggagaagacattgtgatgattcgatggaaacactgcatgaatacattattatataacagaggaatttatagatataa |
19602707 |
T |
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| Q |
213 |
taagaatcaatgaatcatgatatggtccatatgaatcgggtttaaaaatagtgtgaatttaatactttattctttgaaataaatatagtttccgttgttt |
312 |
Q |
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| T |
19602706 |
taagaatcaatgaatcataatatggtccatatgagtcgggtttaaaaatagtgtgaatttaatacttttttctttgaaataaatatagtttccgttgttt |
19602607 |
T |
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| Q |
313 |
atgtattttttgccagcc |
330 |
Q |
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| T |
19602606 |
atgtattttttgccagcc |
19602589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 347 - 424
Target Start/End: Complemental strand, 19602535 - 19602458
Alignment:
| Q |
347 |
aacatgtaacggcataaatttatcatgtttgtcggtttaattctttttggatagaacgcccgtttaagaattactcct |
424 |
Q |
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| T |
19602535 |
aacatgtaacggcataaatttatcatgtttgtcggtttaattctttttggatagaacgcccgtttaaaaattactcct |
19602458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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